Stem-loop ppt-MIR1023b

Accession

MI0005961

Description

Physcomitrella patens ppt-MIR1023b precursor miRNA

Sequence

gaagcgcggcgggccagcuugcaauuucaugacACACUCUCUCCAUUUCUCUGCcugucaugacuugguugaucgauggagcggugguuuucauugcccgauugaggaucaggaguuggggAGAGAAUUGAAGAGAGUGCAUugugaauugcaagcuccuccuuucuuuucg
((((.(.((.(((..(((((((((((.(((((..((((((((.((.((((((.(((...((..(((((((..(((((((.((((((.....)))))))).))))).))))))).)).))).)))))).)).))))))))..)))))))))))))))))))))...).)))).

Structure

-    c --c  c   cc           u     cA        C  U      G   guc  ga       ga     -  a      g 
 gaag g   gg ggg  agcuugcaauu cauga  CACUCUCU CA UUCUCU Ccu   au  cuugguu  ucgau gg gcggug u
 |||| |   || |||  ||||||||||| |||||  |||||||| || |||||| |||   ||  |||||||  ||||| || |||||| u
 cuuu c   cc ucc  ucgaacguuaa guguU  GUGAGAGA GU AAGAGA ggg   ug  ggacuag  aguua cc cguuac u
g    u uuu  -   --           -     AC        A  U      g   --u  -a       -g     g  -      u 

Annotation confidence Not enough data

Genome context

Chr01: 15791193-15791364 [-]

Mature ppt-miR1023b-5p

• Accession: MIMAT0005104
• Description: Physcomitrella patens ppt-miR1023b-5p mature miRNA
• Sequence: 34 - ACACUCUCUCCAUUUCUCUGC - 54
• Evidence: experimental ; 454 [1]

Mature ppt-miR1023b-3p

• Accession: MIMAT0005105
• Description: Physcomitrella patens ppt-miR1023b-3p mature miRNA
• Sequence: 122 - AGAGAAUUGAAGAGAGUGCAU - 142
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769