Stem-loop ppt-MIR1024a

Accession

MI0005964

Description

Physcomitrella patens ppt-MIR1024a precursor miRNA

Sequence

ggacgagaucgcggccgucaugaguuuugucgacgcccugcaauucaagcagacucgauuacaauguuugccgccgacgucacgcaugucacgugguuauuuguacuucagUCUGGUUGGAUUGUAGGCCUCcgcaaggcuucaugacucacucaacugcug
((.((......)).))((((((((((((((.((.(((.((((((((((.((((((.((.(((((.....(((((.(((((.....)))))..)))))...)))))..)))))))).))))))))))))).)).))))))).)))))))..............

Structure

ggacgagaucgcggcc       -       c  c   c          g      c  -u     uguuu     -c     c 
                gucauga guuuugu ga gcc ugcaauucaa cagacu ga  uacaa     gccgc  gacgu a
                ||||||| ||||||| || ||| |||||||||| |||||| ||  |||||     |||||  ||||| c
                caguacu cggaacg CU CGG AUGUUAGGUU GUCUga cu  auguu     uggug  cugua g
--gucgucaacucacu       u       c  C   -          G      -  uc     --uau     ca     c 

Annotation confidence Not enough data

Genome context

Chr01: 15203931-15204092 [-]

Mature ppt-miR1024a

• Accession: MIMAT0005109
• Description: Physcomitrella patens ppt-miR1024a mature miRNA
• Sequence: 112 - UCUGGUUGGAUUGUAGGCCUC - 132
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769