Stem-loop ppt-MIR1025

Accession

MI0005966

Description

Physcomitrella patens ppt-MIR1025 precursor miRNA

Sequence

687879 reads, 29768.0 reads per million, 10 experiments

guuccggugcaaggucguguugaggagucguguUUUUAGUUUUGUUGUGGGCUGUaaggguggcugcgggagaaauuauuaucauucugcgggauguccucuacccacuccgccuucccugucuguugucgagugggggucucgccugcuccuuccuucUGCCACAACAAAGCUAAUAACucgacucauccugacaccacgucucuggcu
...((((.(..(.((.(((((((.((((((.(((.(((((((((((((((.(.(.(((((.((..(((((.((.(((.....(((((....))))).......(((((((.((..............)).)))))))))).)).))))).)).)))))).)))))))))))))))).))).)))))).))..))))).)).)).))))..

Structure

guu    u ca g  c     --  g      u   U               G U U     u  cu     a  a   auuaucauucugcgggauguccucua       c  cuuccc 
   ccgg g  a gu guguu  ga gagucg guU UUAGUUUUGUUGUGG C G aaggg gg  gcggg ga auu                          cccacuc gc      u
   |||| |  | || |||||  || |||||| ||| ||||||||||||||| | | ||||| ||  ||||| || |||                          ||||||| ||       
   gguc c  u ca cacag  cu cucagc CAA AAUCGAAACAACACC G c uuccu cc  cgucc cu ugg                          gggugag ug      g
-uc    u -- g  c     uc  a      u   U               - U -     u  -u     g  c   --------------------------       c  uugucu 

Annotation confidence High

Genome context

Chr13: 4841439-4841648 [+]

Mature ppt-miR1025-5p

• Accession: MIMAT0053725
• Description: Physcomitrella patens ppt-miR1025-5p mature miRNA
• Sequence: 34 - UUUUAGUUUUGUUGUGGGCUGU - 55
• Evidence: experimental ; unknown

Mature ppt-miR1025-3p

• Accession: MIMAT0005111
• Description: Physcomitrella patens ppt-miR1025-3p mature miRNA
• Sequence: 160 - UGCCACAACAAAGCUAAUAAC - 180
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769