Stem-loop ppt-MIR1026b

Accession

MI0005968

Description

Physcomitrella patens ppt-MIR1026b precursor miRNA

Literature search

2 open access papers mention ppt-MIR1026b
(4 sentences)

Sequence

47250 reads, 1944.0 reads per million, 10 experiments

caggaacauaauugagacucucugaacucUGAGAAAGACUUGAGAGGACAcuccugcaacaacuguggcaauuccaugcaguuauagcagcaucugcagcggcggUUCUCUCUAGUCUUUCUUGGAcuuuggauggcuucuucugcaacauc
(((((........(((.((.((((((.(((((((((((((.((((((((.((.(((((....((((...((((......))))...))))....))))).))..)))))))).))))))))))))).)))))).)).)))))))).......

Structure

-------     acauaauu   a  c      c             U        -A  c     acaa    ggc    cc 
       cagga        gag cu ucugaa ucUGAGAAAGACU GAGAGGAC  cu cugca    cugu   aauu  a
       |||||        ||| || |||||| ||||||||||||| ||||||||  || |||||    ||||   ||||   
       gucuu        cuu gg agguuu AGGUUCUUUCUGA CUCUCUUg  gg gacgu    gacg   uuga  u
cuacaac     --------   c  u      c             U        gc  c     cuac    aua    cg 

Annotation confidence High

Genome context

Chr19: 4620195-4620346 [+]

Mature ppt-miR1026b-5p

• Accession: MIMAT0005113
• Description: Physcomitrella patens ppt-miR1026b-5p mature miRNA
• Sequence: 30 - UGAGAAAGACUUGAGAGGACA - 50
• Evidence: experimental ; 454 [1]

Mature ppt-miR1026b-3p

• Accession: MIMAT0053726
• Description: Physcomitrella patens ppt-miR1026b-3p mature miRNA
• Sequence: 106 - UUCUCUCUAGUCUUUCUUGGA - 126
• Evidence: experimental ; unknown

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769