Accession
MI0005971
Description
Physcomitrella patens
ppt-MIR1028a precursor miRNA
Literature search
1 open access papers mention ppt-MIR1028a
(1 sentences)
(1 sentences)
Sequence
acccgauuuaccuucacaucuguuccagcUCUUAGAUCUACAAUGUCACAugaacacauacuugguaacgaaucuggcaguaagacuucauuuauauggguccauuccgcuccaagcuuucacaucugugacagauuuagcaauauagugaaaaucugaccguuggugaugcaacugaagcaaguuuucacgUGACAUUGUAGAUCUACGUGCcggauuaguggugaaagccucaaguu
............(((((..(((.(((.((.(.(((((((((((((((((.((((.((...(((((..........(((.(...((((.(((....)))))))....).))))))))...((((....))))(((((((.((......))..)))))))...((((......))))........)).)))).))))))))))))))))).).)).))).)))..)))))...........
............(((((..(((.(((.((.(.(((((((((((((((((.((((.((...(((((..........(((.(...((((.(((....)))))))....).))))))))...((((....))))(((((((.((......))..)))))))...((((......))))........)).)))).))))))))))))))))).).)).))).)))..)))))...........
Structure
acccgauuuacc au u a U U A c ----------------------------------------------------------------aua uaacgaaucu a -uaa u u
uucac cug ucc gc C UAGAUCUACAAUGUCAC ugaa ac cuugg ggc g gacu cau u
||||| ||| ||| || | ||||||||||||||||| |||| || ||||| ||| | |||| |||
aagug gau agg CG G AUCUAGAUGUUACAGUg acuu ug gaacc ucg c cugg gua a
-uugaacuccga gu u c U C c u aacgaagucaacguagugguugccagucuaaaagugauauaacgauuuagacagugucuacacuuuc ---------- c uuac - u
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
Chr21: 9417251-9417489 [-]
Database links
Mature ppt-miR1028a-5p
| Accession | MIMAT0005116 |
| Description | Physcomitrella patens ppt-miR1028a-5p mature miRNA |
| Sequence | 30 - UCUUAGAUCUACAAUGUCACA - 50 |
| Evidence |
experimental
454 [1] |
Mature ppt-miR1028a-3p
| Accession | MIMAT0005117 |
| Description | Physcomitrella patens ppt-miR1028a-3p mature miRNA |
| Sequence | 193 - UGACAUUGUAGAUCUACGUGC - 213 |
| Evidence |
experimental
454 [1] |
References
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