Stem-loop ppt-MIR1028b

Accession

MI0005972

Description

Physcomitrella patens ppt-MIR1028b precursor miRNA

Literature search

1 open access papers mention ppt-MIR1028b
(1 sentences)

Sequence

caaacaagcaaauccauucuuggacuaguUCUUAGAUCUACAAUGCCACCuacaacagcaauacuuaagguuaugagaagauaucuaucaugcucucuggagugugguccucuucuuacaaucuuaaauuuuaaauuucuugaaaggCGGCAUUGUGGACCUAAGACCuuggucaaguguggaauaaggcuaaa
......(((...(((((.((((.(((((.((((((.(((((((((((.(((.............((((((((.((((((((.....(((((((((....)))))))))..)))))))).))))))))..(((((.....)))))))).))))))))))).)))))).).)))))))).))))).....)))...

Structure

caaaca   --aaa     u    g    - u      A           A   ----acaacagcaauac        a        uaucu         u 
      agc     uccau cuug acua g UCUUAG UCUACAAUGCC CCu                 uuaagguu ugagaaga     aucaugcuc c
      |||     ||||| |||| |||| | |||||| ||||||||||| |||                 |||||||| ||||||||     |||||||||  
      ucg     aggug gaac uggu C AGAAUC AGGUGUUACGG gga                 aauucuaa auucuucu     uggugugag u
---aaa   gaaua     u    -    u C      C           C   aaguucuuuaaauuuua        c        ---cc         g 

Annotation confidence Not enough data

Genome context

Chr14: 13799531-13799724 [+]

Mature ppt-miR1028b-5p

• Accession: MIMAT0005118
• Description: Physcomitrella patens ppt-miR1028b-5p mature miRNA
• Sequence: 30 - UCUUAGAUCUACAAUGCCACC - 50
• Evidence: experimental ; 454 [1]

Mature ppt-miR1028b-3p

• Accession: MIMAT0005119
• Description: Physcomitrella patens ppt-miR1028b-3p mature miRNA
• Sequence: 148 - CGGCAUUGUGGACCUAAGACC - 168
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769