Stem-loop ppt-MIR1028c

Accession

MI0005973

Description

Physcomitrella patens ppt-MIR1028c precursor miRNA

Literature search

1 open access papers mention ppt-MIR1028c
(1 sentences)

Sequence

2053 reads, 90.0 reads per million, 10 experiments

cgaagacauggaagauuucauccgcgaccuugcUCUUAGAUCUACAAUGCCUCUUgcgaaacugacagcggaauaccggacuuuuauuugaucaugauggaauccacaugugccucauacuucaggaauccaugcgguccaccaugUGGCAUUGUAGGUUUAAGAGCUgugccgcggguggauugaugaucaccugu
....(((((.((....((((((((((.(...((((((((((((((((((((.....((((........(((....)))........))))..((((.((((..((.((((..(((........)))....)))).)))))).)))).))))))))))))))))))))...).)))))))))))).))).))......

Structure

--cgaa  -   g  agau          a cuu                    UCUUgcgaaacugacagcggaauaccggacuuuuauuugau    a    au  a    --ug   cau 
      ga cau ga    uucauccgcg c   gcUCUUAGAUCUACAAUGCC                                         caug ugga  cc caug    ccu   a
      || ||| ||    |||||||||| |   ||||||||||||||||||||                                         |||| ||||  || ||||    |||    
      cu gua uu    aggugggcgc g   CGAGAAUUUGGAUGUUACGG                                         guac accu  gg guac    gga   c
ugucca  a   g  ----          c ugU                    ----------------------------------------U    c    --  c    cuaa   cuu 

Annotation confidence High

Genome context

Chr02: 1280097-1280293 [-]

Mature ppt-miR1028c-5p

• Accession: MIMAT0005120
• Description: Physcomitrella patens ppt-miR1028c-5p mature miRNA
• Sequence: 34 - UCUUAGAUCUACAAUGCCUCUU - 55
• Evidence: experimental ; 454 [1]

Mature ppt-miR1028c-3p

• Accession: MIMAT0005121
• Description: Physcomitrella patens ppt-miR1028c-3p mature miRNA
• Sequence: 147 - UGGCAUUGUAGGUUUAAGAGCU - 168
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769