Stem-loop ppt-MIR1030a

Accession

MI0005975

Description

Physcomitrella patens ppt-MIR1030a precursor miRNA

Sequence

aagguacgcaauuaaagcugcaccgucacauuUCUGCAUCUGCACCUGCACCAaaacgcgacuuugagguugugauggaauucugcagucacacccagccauuugcaagaguguucugccgguguuggauuguggcaauggauugcauucacaggcuuguguacuggugcagugcuuaugcagaaauguugcguuguagcucaaacuggauugag
........(((((..(((((((.(((.((((((((((((..((((.(((((((..((((......(((.((((((((.(((((....((((((.(((((.(((.(((.((....))))).))))))))..))))))...))))).)).)))))).)))))))..)))))))))))..)))))))))))).))).))))))).......)))))..

Structure

aagguacg     -----aa       c   c            CU    C       aa    gacuuu   g      -  g     ugca      -c     c   u   a  g 
        caauu       agcugca cgu acauuUCUGCAU  GCAC UGCACCA  acgc      gag uuguga ug aauuc    gucaca  ccagc auu gca ga u
        |||||       ||||||| ||| ||||||||||||  |||| |||||||  ||||      ||| |||||| || |||||    ||||||  ||||| ||| ||| ||  
        guuag       ucgaugu gcg uguaaagacgua  cgug acguggu  ugug      uuc gacacu ac uuagg    cggugu  gguug ugg cgu cu g
------ga     gucaaac       u   u            uu    -       ca    ------   g      u  g     -uaa      ua     -   c   -  u 

Annotation confidence Not enough data

Genome context

Chr04: 17155934-17156148 [+]

Mature ppt-miR1030a

• Accession: MIMAT0005123
• Description: Physcomitrella patens ppt-miR1030a mature miRNA
• Sequence: 33 - UCUGCAUCUGCACCUGCACCA - 53
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769