Stem-loop ppt-MIR1030c

Accession

MI0005977

Description

Physcomitrella patens ppt-MIR1030c precursor miRNA

Sequence

uacuccuugcucugcugcaucguaaugcaUCUGCAUCUGCACCUGCACCAcguugugauaggaacaaaacucugucuugcugauucccugcacacaugccuuuguuacccagcauucucgaauacggcgucggugcuauccucagauaaguagaguuguccucacuagguuggugaggugcauaugcagaggcguuacauugcagcugcuuaauauug
........((...((((((..(((((((.(((((((.(((((((.((((((.(.((((..(((.((..((((((.((((((((......((((..(((((((((..............))))...)))))..)))).....)))).))))))))))))))))))).).).)))))))))))).))))))).)))))))..)))))).)).........

Structure

-uacuccuu  ucu      uc       a       C       G     - g u    ua   a  aa      u    -    uucccu    ac     ---    uuaccc 
         gc   gcugca  guaaugc UCUGCAU UGCACCU CACCA c u guga  gga ca  acucug cuug cuga      gcac  augcc   uuug      a
         ||   ||||||  ||||||| ||||||| ||||||| ||||| | | ||||  ||| ||  |||||| |||| ||||      ||||  |||||   ||||       
         cg   cgacgu  cauugcg agacgua acgugga guggu g a cacu  ccu gu  ugagau gaau gacu      cgug  ugcgg   aagc      g
guuauaauu  --u      ua       g       u       -     u g u    --   -  --      -    a    -ccuau    gc     cau    ucuuac 

Annotation confidence Not enough data

Genome context

Chr13: 13778771-13778988 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR1030c

Mature ppt-miR1030c

• Accession: MIMAT0005125
• Description: Physcomitrella patens ppt-miR1030c mature miRNA
• Sequence: 30 - UCUGCAUCUGCACCUGCACCA - 50
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769