Accession
MI0005978
Description
Physcomitrella patens
ppt-MIR1030d precursor miRNA
Sequence
2582
reads,
116.0
reads per million, 10 experiments
aguccuccgcucugcugcaauguaaugugUCUGCAUCUGCACCUGCACCAcgguguaacaguggcgacgcuuuuucuugcggauaucaggcacucaugccguugcuucccugcauuuuccaauguggcguuggugcaauccgcagacaaucagugucucucacauuacgaugGUGAGAUGCAGAUGCAGAGGUguuacauugcaacugacccucaauu
..........((.(.(((((((((((((.((((((((((((.((.(((((...(((((..((((.((((((..((.((((((((.....(((((.((((((.(((......)))..........)))))).))))).))))))))..))..))))))..)))).))))).))))))).)))))))))))).))))))))))))).).)).........
..........((.(.(((((((((((((.((((((((((((.((.(((((...(((((..((((.((((((..((.((((((((.....(((((.((((((.(((......)))..........)))))).))))).))))))))..))..))))))..)))).))))).))))))).)))))))))))).))))))))))))).).)).........
Structure
aguccuccgc u c g C G cgg ca -c uu -c aucag c ---------u uu
uc g ugcaauguaaugu UCUGCAUCUGCA CU CACCA uguaa gugg gacgcu uu uugcggau gcacu augccg ugc c
|| | ||||||||||||| |||||||||||| || ||||| ||||| |||| |||||| || |||||||| ||||| |||||| |||
ag c acguuacauugUG AGACGUAGACGU GA GUGgu gcauu cacu cuguga aa gacgccua cgugg ugcggu acg c
-uuaacuccc u a G A - --a -a cu cu ca ----a u guaaccuuuu uc
Annotation confidence
High
Do you think this miRNA is real?
Genome context
Chr03: 9992930-9993147 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppt-MIR1030d
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppt-miR1030d-5p
| Accession | MIMAT0005126 |
| Description | Physcomitrella patens ppt-miR1030d-5p mature miRNA |
| Sequence | 30 - UCUGCAUCUGCACCUGCACCA - 50 |
| Evidence |
experimental
454 [1] |
Mature ppt-miR1030d-3p
| Accession | MIMAT0053733 |
| Description | Physcomitrella patens ppt-miR1030d-3p mature miRNA |
| Sequence | 173 - GUGAGAUGCAGAUGCAGAGGU - 193 |
| Evidence |
experimental
unknown |
References
|
