Accession
MI0005979
Description
Physcomitrella patens
ppt-MIR1030e precursor miRNA
Sequence
3171
reads,
145.0
reads per million, 10 experiments
gaaaauccuugaagcugcaacgcuacuuuUCUGCAUCUGCACCUGCACCAagaugcgauaacauguacagaugaaccaaauacacaguuguacugucaugcccaguuagccacuggacuugauuuguugaacaauuauuuguacucgcuuuaucgcguacugGUGCAGUGCCUAUGCAGACAUguaguguuguagcuggaugcagauc
....((((....((((((((((((((...(((((((..((((.(((((((..(((((((((...(((((((((.............(((((((.((((.(.(((((.....))))).).))))..))...)))))))))))))).....)))))))))..)))))))))))..)))))))...)))))))))))))))))).......
....((((....((((((((((((((...(((((((..((((.(((((((..(((((((((...(((((((((.............(((((((.((((.(.(((((.....))))).).))))..))...)))))))))))))).....)))))))))..)))))))))))..)))))))...)))))))))))))))))).......
Structure
---gaaa uuga uuu CU C ag --cau aaccaaauacaca --- -u u c u
aucc agcugcaacgcuac UCUGCAU GCAC UGCACCA augcgauaa guacagaug guugu ac guca g ccagu a
|||| |||||||||||||| ||||||| |||| ||||||| ||||||||| ||||||||| ||||| || |||| | ||||| g
uagg ucgauguugugaug AGACGUA CGUG ACGUGgu ugcgcuauu cauguuuau uaaca ug uagu c gguca c
cuagacg ---- UAC UC - ca ucgcu ------------- agu uu u a c
Annotation confidence
High
Do you think this miRNA is real?
Genome context
Chr03: 9993235-9993442 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppt-MIR1030e
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppt-miR1030e-5p
| Accession | MIMAT0005127 |
| Description | Physcomitrella patens ppt-miR1030e-5p mature miRNA |
| Sequence | 30 - UCUGCAUCUGCACCUGCACCA - 50 |
| Evidence |
experimental
454 [1] |
Mature ppt-miR1030e-3p
| Accession | MIMAT0053734 |
| Description | Physcomitrella patens ppt-miR1030e-3p mature miRNA |
| Sequence | 163 - GUGCAGUGCCUAUGCAGACAU - 183 |
| Evidence |
experimental
unknown |
References
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