Accession
MI0005980
Description
Physcomitrella patens
ppt-MIR1030f precursor miRNA
Sequence
2735
reads,
121.0
reads per million, 10 experiments
ccucuacauaacuacuccaaugccacguaUCUGCAUCUGCACCUGCACCAaaguuuuguaauucuacggcucgugguagucuguuguugugaaggugggauguagcugaguguauuacucgguguucauuugaucauuauuacccgauggugcggguucuuaugcAGAGCCGUGGCAUUGGAGUAAUCcucuacuu
............(((((((((((((((..(((((((..(.((((((((((.....(((((....))))).(((.((((..........((((.(((.(((((..((((((((...))))))))...))))).))).))))))))))))))))))))).)..)))))))..)))))))))))))))...........
............(((((((((((((((..(((((((..(.((((((((((.....(((((....))))).(((.((((..........((((.(((.(((((..((((((((...))))))))...))))).))).))))))))))))))))))))).)..)))))))..)))))))))))))))...........
Structure
ccucuacauaac ua CU C aaguuuuguaauucuacggc u gucuguuguu a g -ua u
uacuccaaugccacg UCUGCAU G ACCUGCACCA ucg ggua guga ggu ggaug gcugagug
||||||||||||||| ||||||| | |||||||||| ||| |||| |||| ||| ||||| |||||||| a
AUGAGGUUACGGUGC AGAcgua c ugggcguggu agc ccau uauu cua uuuac uggcucau
-uucaucucCUA CG uu u -------------------- - ---------- a g uug u
Annotation confidence
Low
Do you think this miRNA is real?
Genome context
Chr14: 495765-495960 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ppt-MIR1030f
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppt-miR1030f-5p
| Accession | MIMAT0005128 |
| Description | Physcomitrella patens ppt-miR1030f-5p mature miRNA |
| Sequence | 30 - UCUGCAUCUGCACCUGCACCA - 50 |
| Evidence |
experimental
454 [1] |
Mature ppt-miR1030f-3p
| Accession | MIMAT0053735 |
| Description | Physcomitrella patens ppt-miR1030f-3p mature miRNA |
| Sequence | 166 - AGAGCCGUGGCAUUGGAGUAAUC - 188 |
| Evidence |
experimental
unknown |
References
|
