Accession
MI0005981
Description
Physcomitrella patens
ppt-MIR1030g precursor miRNA
Sequence
2377
reads,
106.0
reads per million, 10 experiments
ccccugcauuacugcuucaaugccacguaUCUGCAUCUGCACCUGCACCAaaguuucgaaaugcuaagcucuaaugugaaugaugacacuuuuuuuguacccaaagugggcaugaagcuguguguucugcuuggugaucguuucacaguuacgacucgaugGUGCGGGUUCUUAUGCAGAaccguggcauuggagcaaucccuuuuaa
............(((((((((((((((..(((((((..(.((((((((((..(..(((.(((............((((((((((.(((.......))).((((...))))(((.((((.(......).)))).))))))).))))))))).)))..)..)))))))))).)..)))))))..)))))))))))))))...........
............(((((((((((((((..(((((((..(.((((((((((..(..(((.(((............((((((((((.(((.......))).((((...))))(((.((((.(......).)))).))))))).))))))))).)))..)..)))))))))).)..)))))))..)))))))))))))))...........
Structure
ccccugcauuac ua CU C aa uu a gcuaagcucuaa - gacacuuuuuuuguacccaaaguggg g u ug
ugcuucaaugccacg UCUGCAU G ACCUGCACCA g ucg aau ugugaa ugau cau aagc g u
||||||||||||||| ||||||| | |||||||||| | ||| ||| |||||| |||| ||| |||| |
acgagguuacggugc AGACGUA C UGGGCGUGgu c agc uug acacuu gcua gug uucg c g
-aauuuucccua ca UU U ag uc a ------------ u -------------------------- g u uu
Annotation confidence
High
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Genome context
Chr10: 1725749-1725956 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppt-MIR1030g
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppt-miR1030g-5p
| Accession | MIMAT0005129 |
| Description | Physcomitrella patens ppt-miR1030g-5p mature miRNA |
| Sequence | 30 - UCUGCAUCUGCACCUGCACCA - 50 |
| Evidence |
experimental
454 [1] |
Mature ppt-miR1030g-3p
| Accession | MIMAT0053736 |
| Description | Physcomitrella patens ppt-miR1030g-3p mature miRNA |
| Sequence | 162 - GUGCGGGUUCUUAUGCAGA - 180 |
| Evidence |
experimental
unknown |
References
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