Stem-loop ppt-MIR1030g

Accession

MI0005981

Description

Physcomitrella patens ppt-MIR1030g precursor miRNA

Sequence

ccccugcauuacugcuucaaugccacguaUCUGCAUCUGCACCUGCACCAaaguuucgaaaugcuaagcucuaaugugaaugaugacacuuuuuuuguacccaaagugggcaugaagcuguguguucugcuuggugaucguuucacaguuacgacucgauggugcggguucuuaugcagaaccguggcauuggagcaaucccuuuuaa
............(((((((((((((((..(((((((..(.((((((((((..(..(((.(((............((((((((((.(((.......))).((((...))))(((.((((.(......).)))).))))))).))))))))).)))..)..)))))))))).)..)))))))..)))))))))))))))...........

Structure

ccccugcauuac               ua       CU C          aa uu   a   gcuaagcucuaa      -    gacacuuuuuuuguacccaaaguggg   g    u ug 
            ugcuucaaugccacg  UCUGCAU  G ACCUGCACCA  g  ucg aau            ugugaa ugau                          cau aagc g  u
            |||||||||||||||  |||||||  | ||||||||||  |  ||| |||            |||||| ||||                          ||| |||| |   
            acgagguuacggugc  agacgua  c ugggcguggu  c  agc uug            acacuu gcua                          gug uucg c  g
-aauuuucccua               ca       uu u          ag uc   a   ------------      u    --------------------------   g    u uu 

Annotation confidence Not enough data

Genome context

Chr10: 1725749-1725956 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR1030g

Mature ppt-miR1030g

• Accession: MIMAT0005129
• Description: Physcomitrella patens ppt-miR1030g mature miRNA
• Sequence: 30 - UCUGCAUCUGCACCUGCACCA - 50
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769