Accession
MI0005982
Description
Physcomitrella patens
ppt-MIR1030h precursor miRNA
Sequence
1409
reads,
63.0
reads per million, 10 experiments
gcuacguuaccuaUCUGCAUCUGCACCUGCACCGagauucgaagaguaaugaagaaucauauacgcaguugcagucauuuccaguucaucacuggaccugacaaauugaagcaaugaugcaauucucauucucgcuuaucgGUGCAGUGCUUAUGCAGAUAUguggcguug
...(((((((.(((((((((..((((.((((((((....(((.((((...(((..(((((.....(((((...((((..((((((.....))))))..)))).))))).....)))))....)))..)))))))....))))))))))))..))))))))).)))))))..
...(((((((.(((((((((..((((.((((((((....(((.((((...(((..(((((.....(((((...((((..((((((.....))))))..)))).))))).....)))))....)))..)))))))....))))))))))))..))))))))).)))))))..
Structure
gcu c CU C gauu a aau --ga auacg gca uu u acguuac uaUCUGCAU GCAC UGCACCGa cga gagu gaa aucau caguu guca uccagu c ||||||| ||||||||| |||| |||||||| ||| |||| ||| ||||| ||||| |||| |||||| a ugcggug AUAGACGUA CGUG ACGUGgcu gcu cuua cuu uagua guuaa cagu agguca u -gu U UU - auuc - -cu aacg acgaa --a cc c
Annotation confidence
High
Do you think this miRNA is real?
Genome context
Chr13: 13778496-13778666 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ppt-MIR1030h
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppt-miR1030h-5p
| Accession | MIMAT0005130 |
| Description | Physcomitrella patens ppt-miR1030h-5p mature miRNA |
| Sequence | 14 - UCUGCAUCUGCACCUGCACCG - 34 |
| Evidence |
experimental
454 [1] |
Mature ppt-miR1030h-3p
| Accession | MIMAT0053737 |
| Description | Physcomitrella patens ppt-miR1030h-3p mature miRNA |
| Sequence | 142 - GUGCAGUGCUUAUGCAGAUAU - 162 |
| Evidence |
experimental
unknown |
References
|
