Accession
MI0005983
Description
Physcomitrella patens
ppt-MIR1030i precursor miRNA
Sequence
586
reads,
26.0
reads per million, 10 experiments
aauucuccucuucaucgcuguaaugccauguuCCUGCAUCUGCACCUGCACCGcacugccucacgagaaugugcacgaauggaucagagcgguguugugcaaauccugcuuucagucaaucacugagcuugaguuuuagcaauucuuauuuccucugaacuuucuucuggcauuauagugGUGGAGGUGCUUAUGCAGAAauauugcauugcggcugagagccacuaaug
.......((((.((..((((((((((.(((((.((((((..((((((.((((((..((((....(((((.((.((.((..(((...((((((.(((.....))).))))))(((((.....)))))(((........)))..........))))))).)).)))))..)))).....)))))).))))))..)))))).))))).)))))))))))))))).........
.......((((.((..((((((((((.(((((.((((((..((((((.((((((..((((....(((((.((.((.((..(((...((((((.(((.....))).))))))(((((.....)))))(((........)))..........))))))).)).)))))..)))).....)))))).))))))..)))))).))))).)))))))))))))))).........
Structure
--aauucuc u uc c C CU G ---ac ucac u g c au ------------------------------------uca u g
cucu ca gcuguaaugc auguu CUGCAU GCACCU CACCGc ugcc gagaa gu ca ga gga gagcgg guu u
|||| || |||||||||| ||||| |||||| |||||| |||||| |||| ||||| || || || ||| |||||| ||| g
gaga gu cggcguuacg uauaA GACGUA CGUGGA GUGgug acgg uucuu ca gu cu ccu uucguc uaa c
guaaucacc - -- u A UU G auauu --uc u a - -- uuauucuuaacgauuuugaguucgagucacuaacugacu c a
Annotation confidence
High
Do you think this miRNA is real?
Genome context
Chr14: 495467-495696 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ppt-MIR1030i
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppt-miR1030i-5p
| Accession | MIMAT0005131 |
| Description | Physcomitrella patens ppt-miR1030i-5p mature miRNA |
| Sequence | 33 - CCUGCAUCUGCACCUGCACCG - 53 |
| Evidence |
experimental
454 [1] |
Mature ppt-miR1030i-3p
| Accession | MIMAT0053738 |
| Description | Physcomitrella patens ppt-miR1030i-3p mature miRNA |
| Sequence | 181 - GUGGAGGUGCUUAUGCAGAA - 200 |
| Evidence |
experimental
unknown |
References
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