Stem-loop ppt-MIR1031a

Accession

MI0005985

Description

Physcomitrella patens ppt-MIR1031a precursor miRNA

Sequence

4032 reads, 171.0 reads per million, 10 experiments

acugcgaaauuucuggaucauaaauuugcUCAAUGCUCUCUGGAGCUUCUguguuaccacguuggagagaguguugauuuggacucccugauagggcuuaggcaucuuucagcccuugcuucggguuuucguccuuauuggccucccucauugggccucAGAAGCUUCACAGAACAUUGAcuugauuugugacccugugaugaggaag
..(.(...(((.(.((.(((((((((...((((((.(((.(((((((((((.(...(((.....(((.(((.((((((..((((..(((((.((((((.(((...)))..))))))....))))).....))))..))))))))).)))..)))..).))))))))))).))).))))))...))))))))).)).).)))..).)..

Structure

ac g gaa   u u  a         ugc      C   C           u uua   cguug   a   u      uu    ---uc     ---u      -u   c 
  u c   auu c gg ucauaaauu   UCAAUG UCU UGGAGCUUCUg g   cca     gag gag guugau  ggac     ccuga    agggcu  agg  
  | |   ||| | || |||||||||   |||||| ||| ||||||||||| |   |||     ||| ||| ||||||  ||||     |||||    ||||||  ||| a
  a g   uag g cc aguguuuag   AGUUAC AGA ACUUCGAAGAc c   ggu     cuc cuc cgguua  ccug     gggcu    ucccga  uuc  
ga g -ag   u u  c         uuc      A   C           u -cg   ---ua   c   -      uu    cuuuu     ucgu      cu   u 

Annotation confidence High

Genome context

Chr10: 4980250-4980457 [+]

Mature ppt-miR1031a-5p

• Accession: MIMAT0005133
• Description: Physcomitrella patens ppt-miR1031a-5p mature miRNA
• Sequence: 30 - UCAAUGCUCUCUGGAGCUUCU - 50
• Evidence: experimental ; 454 [1]

Mature ppt-miR1031a-3p

• Accession: MIMAT0053740
• Description: Physcomitrella patens ppt-miR1031a-3p mature miRNA
• Sequence: 160 - AGAAGCUUCACAGAACAUUGA - 180
• Evidence: experimental ; unknown

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769