Accession
MI0005993
Description
Physcomitrella patens
ppt-MIR1034 precursor miRNA
Sequence
2618
reads,
111.0
reads per million, 10 experiments
gcguuucaaggcucauaaccucauucuugcaagcACUACGCUGCCAAAGUCAUGAcugucuuccuugcagaagcgacugcaaugucgauauucaUUACUUUGGCAGCGCUGUGCUugccgaauuaagccuuugaguguucguaga
(((....((.(((((....((.((((..((((((((..((((((((((((.((((.((((..(.((((((......)))))).)..)))).)))).))))))))))))..)))))))).))))..))....))))).)))))...
(((....((.(((((....((.((((..((((((((..((((((((((((.((((.((((..(.((((((......)))))).)..)))).)))).))))))))))))..)))))))).))))..))....))))).)))))...
Structure
--- uuuc g uaac -c uu UA C c uu c aa gcg aa gcuca cu auuc gcaagcAC CGCUGCCAAAGU AUGA uguc c uugcag g ||| || ||||| || |||| |||||||| |||||||||||| |||| |||| | |||||| ugc uu ugagu ga uaag cguUCGUG GCGACGGUUUCA Uacu auag g aacguc c aga ---- g uucc au -c UC U u cu u ag
Annotation confidence
High
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Genome context
Chr17: 6851462-6851606 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppt-MIR1034
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppt-miR1034-5p
| Accession | MIMAT0053747 |
| Description | Physcomitrella patens ppt-miR1034-5p mature miRNA |
| Sequence | 35 - ACUACGCUGCCAAAGUCAUGA - 55 |
| Evidence |
experimental
unknown |
Mature ppt-miR1034-3p
| Accession | MIMAT0005141 |
| Description | Physcomitrella patens ppt-miR1034-3p mature miRNA |
| Sequence | 95 - UUACUUUGGCAGCGCUGUGCU - 115 |
| Evidence |
experimental
454 [1] |
References
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