Stem-loop ppt-MIR1035

Accession

MI0005994

Description

Physcomitrella patens ppt-MIR1035 precursor miRNA

Sequence

gggucugaaagcgaagaaguuuuucaaacCGUCUUAGCCCACAAAACGAAuuguugugauuguuugagaucguguauucauauggcagccuugcaagcugucacagaucucucugucacgauucguuuugugagcuaagaagguuugaagaagaguauucuccauguugu
...(((........)))..(((((((((((.(((((((.((((((((((...((((((((.....((((((.(((........((((((.......)))))))))))))))...)))))))))))))))))).))))))).)))))))))))(((....)))........

Structure

gggucugaaagcgaagaag           G       C          Auu        uguuu      g   auucauau      cu 
                   uuuuucaaacC UCUUAGC CACAAAACGA   guugugau     gagauc ugu        ggcagc  u
                   ||||||||||| ||||||| ||||||||||   ||||||||     |||||| |||        ||||||  g
                   aagaaguuugg agaaucg guguuuugcu   uagcacug     cucuag aca        cugucg  c
-uguuguaccucuuaugag           a       a          ---        --ucu      -   --------      aa 

Annotation confidence Not enough data

Genome context

Chr26: 4641843-4642012 [-]

Mature ppt-miR1035

• Accession: MIMAT0005142
• Description: Physcomitrella patens ppt-miR1035 mature miRNA
• Sequence: 30 - CGUCUUAGCCCACAAAACGAA - 50
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769