Accession
MI0005999
Description
Physcomitrella patens
ppt-MIR1040 precursor miRNA
Sequence
9586
reads,
413.0
reads per million, 10 experiments
aagaggugaucauauccuuucaguauagaggACGUGUUCAUUUGUGUUCACUacucgauguucaagacuaugcuacuugaacaucgaguagUGAACGCAAAUGAACAUGUUCcuucauacagaaagggcuagcacugacaug
..(.((((......(((((((.((((.(((((((((((((((((((((((((((((((((((((((.........)))))))))))))))))))))))))))))))))).))))).)))).)))))))....))))..)...
..(.((((......(((((((.((((.(((((((((((((((((((((((((((((((((((((((.........)))))))))))))))))))))))))))))))))).))))).)))).)))))))....))))..)...
Structure
-aa -a aucaua a a - acu g ggug uccuuuc guau gaggA CGUGUUCAUUUGUGUUCACUacucgauguucaag a | |||| ||||||| |||| ||||| |||||||||||||||||||||||||||||||||| u c ucac gggaaag caua uucCU GUACAAGUAAACGCAAGUgaugagcuacaaguuc g gua ag --gauc a c U auc
Annotation confidence
Medium
Do you think this miRNA is real?
Genome context
Chr08: 8321356-8321497 [+]
Database links
Mature ppt-miR1040-5p
| Accession | MIMAT0053750 |
| Description | Physcomitrella patens ppt-miR1040-5p mature miRNA |
| Sequence | 32 - ACGUGUUCAUUUGUGUUCACU - 52 |
| Evidence |
experimental
unknown |
Mature ppt-miR1040-3p
| Accession | MIMAT0005150 |
| Description | Physcomitrella patens ppt-miR1040-3p mature miRNA |
| Sequence | 92 - UGAACGCAAAUGAACAUGUUC - 112 |
| Evidence |
experimental
454 [1] |
References
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