Stem-loop ppt-MIR1041

Accession

MI0006000

Description

Physcomitrella patens ppt-MIR1041 precursor miRNA

Sequence

uggacaagucauuuaucuuuaaguguacuUUUUCGGGUGAGAGUGGUCCUgagaaugauugaccaggaaacauaacuuccucaaaaucauuucaaaaccaccaucaccugaaaaacuacaaacuaagauaaacucuguaaua
...((((((...(((((((....((((.((((((((((((..(((((..(((((.(((((....(((((.......)))))...))))))))))..)))))..)))))))))))).))))....)))))))))).)))....

Structure

-ugg   -   cau       uaag    c            GA     CC     a     gacc     ac 
    aca agu   uuaucuu    ugua uUUUUCGGGUGA  GUGGU  Ugaga ugauu    aggaa  a
    ||| |||   |||||||    |||| ||||||||||||  |||||  ||||| |||||    |||||  u
    ugu uca   aauagaa    acau aaaaaguccacu  cacca  acuuu acuaa    uccuu  a
auaa   c   ---       ucaa    c            ac     aa     -     -aac     ca 

Annotation confidence Not enough data

Genome context

Chr08: 3290147-3290288 [+]

Mature ppt-miR1041

• Accession: MIMAT0005151
• Description: Physcomitrella patens ppt-miR1041 mature miRNA
• Sequence: 30 - UUUUCGGGUGAGAGUGGUCCU - 50
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769