Accession
MI0006001
Description
Physcomitrella patens
ppt-MIR1042 precursor miRNA
Sequence
gugagauucuucaauacugugcagaagggGCUGUGCAGGAACUAGAUAGGuccauugcuggauaugcuugucgacggcauuggucgUGUCUAGUCUCUCCACGGCCCGcucuguguuugauugccacgcacua
(((.(.....((((.((...(((((..((((((((.(((.((((((((.(.(((.(((((((((....))))..))))).))).).)))))))).))).))))))))..)))))))))))...))))......
(((.(.....((((.((...(((((..((((((((.(((.((((((((.(.(((.(((((((((....))))..))))).))).).)))))))).))).))))))))..)))))))))))...))))......
Structure
------ a auucu u ugu ag C A G u u -- u
gug g ucaa ac gcaga ggGCUGUG AGG ACUAGAUA G cca ugcug gaua g
||| | |||| || ||||| |||||||| ||| |||||||| | ||| ||||| ||||
cac c aguu ug ugucu CCCGGCAC UCU UGAUCUGU c ggu acggc cugu c
aucacg - --guu - --- cG C C g u u ag u
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
Chr04: 1949553-1949685 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppt-MIR1042
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppt-miR1042-5p
| Accession | MIMAT0005152 |
| Description | Physcomitrella patens ppt-miR1042-5p mature miRNA |
| Sequence | 30 - GCUGUGCAGGAACUAGAUAGG - 50 |
| Evidence |
experimental
454 [1] |
Mature ppt-miR1042-3p
| Accession | MIMAT0005153 |
| Description | Physcomitrella patens ppt-miR1042-3p mature miRNA |
| Sequence | 87 - UGUCUAGUCUCUCCACGGCCCG - 108 |
| Evidence |
experimental
454 [1] |
References
|
