Accession
MI0006002
Description
Physcomitrella patens
ppt-MIR1043 precursor miRNA
Sequence
29657
reads,
1267.0
reads per million, 10 experiments
ugagaagagauuuaacuaggaaacgguuggAGGCCUUCAACUUCAUGCGUGCAaacccugaaugauuuggauggauuuUUGCGCGUGAAUUUGAAGGCUcccauucguugcuagcaugaagaauaagag
...............((((..(((((.(((.(((((((((.((((((((((.(((.((..............)).))).)))))))))).))))))))).))).))))).))))...............
...............((((..(((((.(((.(((((((((.((((((((((.(((.((..............)).))).)))))))))).))))))))).))).))))).))))...............
Structure
ugagaagagauuuaa ga u A C C c ugaaug
cuag aacgg ugg GGCCUUCAA UUCAUGCGUG Aaa cc a
|||| ||||| ||| ||||||||| |||||||||| ||| ||
gauc uugcu acc UCGGAAGUU AAGUGCGCGU uuu gg u
gagaauaagaaguac -g u c U U a uagguu
Annotation confidence
Medium
Do you think this miRNA is real?
Genome context
Chr04: 1949933-1950061 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppt-MIR1043
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppt-miR1043-5p
| Accession | MIMAT0005154 |
| Description | Physcomitrella patens ppt-miR1043-5p mature miRNA |
| Sequence | 31 - AGGCCUUCAACUUCAUGCGUGCA - 53 |
| Evidence |
experimental
454 [1] |
Mature ppt-miR1043-3p
| Accession | MIMAT0005155 |
| Description | Physcomitrella patens ppt-miR1043-3p mature miRNA |
| Sequence | 79 - UUGCGCGUGAAUUUGAAGGCU - 99 |
| Evidence |
experimental
454 [1] |
References
|
