Stem-loop ppt-MIR1044

Accession

MI0006003

Description

Physcomitrella patens ppt-MIR1044 precursor miRNA

Sequence

ugcucaaauuuuuuaccugcugcaagagaGCACAAAUAUGCACUACAAACucaaaugcugucauucaaauguugagcauuugaguUUGUAGUGCAUAUUUGUUUUccuucgguuuaagguuucgcgugaaau
...(((........((((((((.(((.(((.((((((((((((((((((((((((((((..(((....)))...)))))))))))))))))))))))))))).))))))))))...))))......)))...

Structure

ugc   aauuuuuu    ---    c   a   C                            -gu   u 
   uca        accu   gcug aag gaG ACAAAUAUGCACUACAAACucaaaugcu   cau c
   |||        ||||   |||| ||| ||| ||||||||||||||||||||||||||||   |||  
   agu        ugga   uggc uuc cUU UGUUUAUACGUGAUGUUugaguuuacga   gua a
uaa   --gcgcuu    auu    -   -   U                            guu   a 

Annotation confidence Not enough data

Genome context

Chr02: 9633559-9633690 [+]

Mature ppt-miR1044-5p

• Accession: MIMAT0005156
• Description: Physcomitrella patens ppt-miR1044-5p mature miRNA
• Sequence: 30 - GCACAAAUAUGCACUACAAAC - 50
• Evidence: experimental ; 454 [1]

Mature ppt-miR1044-3p

• Accession: MIMAT0005157
• Description: Physcomitrella patens ppt-miR1044-3p mature miRNA
• Sequence: 86 - UUGUAGUGCAUAUUUGUUUU - 105
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769