Accession
MI0006004
Description
Physcomitrella patens
ppt-MIR1045 precursor miRNA
Sequence
168736
reads,
7176.0
reads per million, 10 experiments
gaagcgauaaugggugcacccucaacacgAAGUGCUGGCUUUUUGACGUUuugcuacuaaaugaauaaccgugcagguuaaauucacuagcagCAAGACGUCAAACAACCAGCAcuucgccuucagggcaacuaguguguaucgg
....(((((...(((...((((.((..(((((((((((...((((((((((((((.(((..(((((((((.....)))))..)))).))).))))))))))))))...)))))))))))..)).))))..)))......))))).
....(((((...(((...((((.((..(((((((((((...((((((((((((((.(((..(((((((((.....)))))..)))).))).))))))))))))))...)))))))))))..)).))))..)))......))))).
Structure
gaag ---aug gca c ca CUU a aa -- g
cgaua ggu cccu aa cgAAGUGCUGG UUUGACGUUuugcu cua ugaa uaacc u
||||| ||| |||| || ||||||||||| |||||||||||||| ||| |||| ||||| g
gcuau uca ggga uu gcuucACGACC AAACUGCAGAACga gau acuu auugg c
---g guguga -ac c cc AAC c -c aa a
Annotation confidence
Medium
Do you think this miRNA is real?
Genome context
Chr12: 1736440-1736584 [-]
Database links
Mature ppt-miR1045-5p
| Accession | MIMAT0005158 |
| Description | Physcomitrella patens ppt-miR1045-5p mature miRNA |
| Sequence | 30 - AAGUGCUGGCUUUUUGACGUU - 50 |
| Evidence |
experimental
454 [1] |
Mature ppt-miR1045-3p
| Accession | MIMAT0053752 |
| Description | Physcomitrella patens ppt-miR1045-3p mature miRNA |
| Sequence | 94 - CAAGACGUCAAACAACCAGCA - 114 |
| Evidence |
experimental
unknown |
References
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