Stem-loop ppt-MIR1047

Accession

MI0006006

Description

Physcomitrella patens ppt-MIR1047 precursor miRNA

Literature search

1 open access papers mention ppt-MIR1047
(2 sentences)

Sequence

910 reads, 39.0 reads per million, 10 experiments

uugcguuaugugugaccuaugaccucuuggaucacuagguaguccuugauuacaAAGGCCUUAAUUCUUUACAgcaaacgaguuaaggccccugUGAUCAGCGAUGACCUAGUUGcucaauugggcacagugucucuucgcgagg
(((((......(.(((((.((.((..((((...(((((((.(((.(((((((((..(((((((((((.((......)).)))))))))))..))))))))).))).)))))))...))))..)).)).)).))).)..)))))..

Structure

--     uuaugu u   -  a  a  uc    auc       a   c         AA           U  AC 
  uugcg      g gac cu ug cc  uugg   acuaggu guc uugauuaca  GGCCUUAAUUC UU  A
  |||||      | ||| || || ||  ||||   ||||||| ||| |||||||||  ||||||||||| ||   
  agcgc      c cug ga ac gg  aacu   UGAUCCA UAG GACUAGUgu  ccggaauugag aa  g
gg     ----uu u   u  c  g  uu    cGU       G   C         cc           c  ac 

Annotation confidence Low

Genome context

Chr02: 10752542-10752686 [+]

Mature ppt-miR1047-5p

• Accession: MIMAT0005161
• Description: Physcomitrella patens ppt-miR1047-5p mature miRNA
• Sequence: 55 - AAGGCCUUAAUUCUUUACA - 73
• Evidence: experimental ; 454 [1]

Mature ppt-miR1047-3p

• Accession: MIMAT0005162
• Description: Physcomitrella patens ppt-miR1047-3p mature miRNA
• Sequence: 95 - UGAUCAGCGAUGACCUAGUUG - 115
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769