Stem-loop ppt-MIR1049

Accession

MI0006008

Description

Physcomitrella patens ppt-MIR1049 precursor miRNA

Sequence

agcugggugacagaauggugacuucgcgaucagaccuguuggcgaaagagagucgccucuauuuggacagaucgccccuguaucgacgUCUCUCUUAGCCAAACAGUCUcgucgcuuagggccagaauauccaacgucc
...((((((......((((..((..(((((.((((.(((((((..(((((((.((.......((((((((.......)))).)))))).))))))).))).)))))))).)))))..)).))))...))))))......

Structure

---agc      acagaa    ga  uc     c    c    -   ga       u  ccucuau    -    au 
      ugggug      uggu  cu  gcgau agac uguu ggc  aagagag cg       uugg acag  c
      ||||||      ||||  ||  ||||| |||| |||| |||  ||||||| ||       |||| ||||  g
      accuau      accg  ga  cgcug UCUG ACAA CCG  UUCUCUC gc       agcu uguc  c
ccugca      ---aag    -g  uu     c    -    A   -A       U  -------    a    cc 

Annotation confidence Not enough data

Genome context

Chr08: 4367713-4367851 [-]

Mature ppt-miR1049

• Accession: MIMAT0005165
• Description: Physcomitrella patens ppt-miR1049 mature miRNA
• Sequence: 89 - UCUCUCUUAGCCAAACAGUCU - 109
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769