Accession
MI0006008
Description
Physcomitrella patens
ppt-MIR1049 precursor miRNA
Sequence
60
reads,
2.0
reads per million, 10 experiments
agcugggugacagaauggugacuucgcgaucagACCUGUUGGCGAAAGAGAGUCGccucuauuuggacagaucgccccuguaucgacgUCUCUCUUAGCCAAACAGUCUcgucgcuuagggccagaauauccaacgucc
...((((((......((((..((..(((((.((((.(((((((..(((((((.((.......((((((((.......)))).)))))).))))))).))).)))))))).)))))..)).))))...))))))......
...((((((......((((..((..(((((.((((.(((((((..(((((((.((.......((((((((.......)))).)))))).))))))).))).)))))))).)))))..)).))))...))))))......
Structure
---agc acagaa ga uc c C - GA U ccucuau - au
ugggug uggu cu gcgau agAC UGUU GGC AAGAGAG CG uugg acag c
|||||| |||| || ||||| |||| |||| ||| ||||||| || |||| |||| g
accuau accg ga cgcug UCUG ACAA CCG UUCUCUC gc agcu uguc c
ccugca ---aag -g uu c - A -A U ------- a cc
Annotation confidence
High
Do you think this miRNA is real?
Genome context
Chr08: 4367713-4367851 [-]
Database links
Mature ppt-miR1049-5p
| Accession | MIMAT0053753 |
| Description | Physcomitrella patens ppt-miR1049-5p mature miRNA |
| Sequence | 34 - ACCUGUUGGCGAAAGAGAGUCG - 55 |
| Evidence |
experimental
unknown |
Mature ppt-miR1049-3p
| Accession | MIMAT0005165 |
| Description | Physcomitrella patens ppt-miR1049-3p mature miRNA |
| Sequence | 89 - UCUCUCUUAGCCAAACAGUCU - 109 |
| Evidence |
experimental
454 [1] |
References
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