Stem-loop ppt-MIR1050

Accession

MI0006009

Description

Physcomitrella patens ppt-MIR1050 precursor miRNA

Sequence

guaguugguccuucucuuguugauuucugUGACCACCUUGAUUCCGGCCUaauuugcgcucaaucaucagcagcuggaggaucaacucgauuaaugcaaaacaggcugauaucaggguggucacaaaaucaauccacgguuacccuuacag
((((..(((((.......((((((((.(((((((((((((((..((((((..((((((...((((..(((...)))(((......)))))))..))))))..))))))..)))))))))))))))))))))))....))..))).))))..

Structure

--    uu   --  uucucuu        c               UC      aa      cuc    ----------au   c 
  guag  ggu  cc       guugauuu ugUGACCACCUUGAU  CGGCCU  uuugcg   aauc            cag  
  ||||  |||  ||       |||||||| |||||||||||||||  ||||||  ||||||   ||||            ||| a
  cauu  cca  gg       uaacuaaa acacuggugggacua  gucgga  aaacgu   uuag            guc  
ga    -c   uu  ---cacc        -               ua      ca      -aa    cucaacuaggag   g 

Annotation confidence Not enough data

Genome context

Chr03: 25090088-25090238 [+]

Mature ppt-miR1050

• Accession: MIMAT0005166
• Description: Physcomitrella patens ppt-miR1050 mature miRNA
• Sequence: 30 - UGACCACCUUGAUUCCGGCCU - 50
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769