Stem-loop ppt-MIR1050

Accession

MI0006009

Description

Physcomitrella patens ppt-MIR1050 precursor miRNA

Sequence

27508 reads, 1240.0 reads per million, 10 experiments

guaguugguccuucucuuguugauuucugUGACCACCUUGAUUCCGGCCUaauuugcgcucaaucaucagcagcuggaggaucaacucgauuaaugcaaaacagGCUGAUAUCAGGGUGGUCACAaaaucaauccacgguuacccuuacag
((((..(((((.......((((((((.(((((((((((((((..((((((..((((((...((((..(((...)))(((......)))))))..))))))..))))))..)))))))))))))))))))))))....))..))).))))..

Structure

--    uu   --  uucucuu        c               UC      aa      cuc    ----------au   c 
  guag  ggu  cc       guugauuu ugUGACCACCUUGAU  CGGCCU  uuugcg   aauc            cag  
  ||||  |||  ||       |||||||| |||||||||||||||  ||||||  ||||||   ||||            ||| a
  cauu  cca  gg       uaacuaaa ACACUGGUGGGACUA  GUCGga  aaacgu   uuag            guc  
ga    -c   uu  ---cacc        -               UA      ca      -aa    cucaacuaggag   g 

Annotation confidence High

Genome context

Chr03: 25090088-25090238 [+]

Mature ppt-miR1050-5p

• Accession: MIMAT0005166
• Description: Physcomitrella patens ppt-miR1050-5p mature miRNA
• Sequence: 30 - UGACCACCUUGAUUCCGGCCU - 50
• Evidence: experimental ; 454 [1]

Mature ppt-miR1050-3p

• Accession: MIMAT0053754
• Description: Physcomitrella patens ppt-miR1050-3p mature miRNA
• Sequence: 105 - GCUGAUAUCAGGGUGGUCACA - 125
• Evidence: experimental ; unknown

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769