Stem-loop ppt-MIR1051

Accession

MI0006010

Description

Physcomitrella patens ppt-MIR1051 precursor miRNA

Sequence

uuggcgucucgucuugcgccgauaccuuaacguGGUUCAAGUGAACAGGAAGAgguuugcgagaauguuguucugaaagaauuaaccuggacagaguagcgcagaaugcaacacuaggguuucggaguaucauucuaacaaaucucUUCCUGUCUACUUGAAGCCACaauaaggcuuggugccugcuaugagguaag
(((((((........)))))))(((((((..((((((((((((.(((((((((((((((..((((((.((((((((((.......(((((.....(((........)))....))))).)))))))))).))))))..))))))))))))))).)))))).))))))....((((.....))))....)))))))..

Structure

uuggcgucucgucuugcgccga       -------------------ac      -      A               cg      u          gaauuaa     acaga   gcg 
                      uaccuua                     guGGUU CAAGUG ACAGGAAGAgguuug  agaaug uguucugaaa       ccugg     gua   c
                      |||||||                     |||||| |||||| |||||||||||||||  |||||| ||||||||||       |||||     |||    
                      auggagu                     CACCGA GUUCAU UGUCCUUcucuaaac  ucuuac augaggcuuu       ggauc     cgu   a
--------------------ga       aucguccgugguucggaauaa      A      C               aa      u          ------g     -acaa   aag 

Annotation confidence Not enough data

Genome context

Chr12: 5498625-5498821 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppt-MIR1051

Mature ppt-miR1051-5p

• Accession: MIMAT0005167
• Description: Physcomitrella patens ppt-miR1051-5p mature miRNA
• Sequence: 34 - GGUUCAAGUGAACAGGAAGA - 53
• Evidence: experimental ; 454 [1]

Mature ppt-miR1051-3p

• Accession: MIMAT0005168
• Description: Physcomitrella patens ppt-miR1051-3p mature miRNA
• Sequence: 147 - UUCCUGUCUACUUGAAGCCAC - 167
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769