Stem-loop ppt-MIR1052

Accession

MI0006011

Description

Physcomitrella patens ppt-MIR1052 precursor miRNA

Sequence

auggaguguguugaauccuuggccguauccaugccgcaaucaguaaaagggagucacgcuguguugugagcacugcagagccagcauucgugagucgauagugauacauauagauugcuugcUUCCUUUUAUUGAUUGUGGUAuagaugcgcuugagugauaccuuguguaac
...(((.((((((..((...(((.(((((.((((((((((((((((((((((((((..((((((.(((..(((((..((..((.......))..))..))))).)))))))))..))...)))))))))))))))))))))))).)))))))).)).))))))))).......

Structure

----aug   u      aa  cuu   c     c                        ---  cg      u   ag     ca  gc  gc 
       gag guguug  uc   ggc guauc augccgcaaucaguaaaagggagu   ca  cugugu gug  cacug  ga  ca  a
       ||| ||||||  ||   ||| ||||| ||||||||||||||||||||||||   ||  |||||| |||  |||||  ||  ||  u
       uuc cauagu  ag   ucg cguag uAUGGUGUUAGUUAUUUUCCUUcg   gu  gauaua cau  gugau  cu  gu  u
caaugug   -      -g  --u   -     a                        uuc  ua      -   -a     ag  ga  gc 

Annotation confidence Not enough data

Genome context

Chr11: 10754740-10754912 [-]

Mature ppt-miR1052

• Accession: MIMAT0005169
• Description: Physcomitrella patens ppt-miR1052 mature miRNA
• Sequence: 123 - UUCCUUUUAUUGAUUGUGGUA - 143
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769