Stem-loop ppt-MIR1053

Accession

MI0006012

Description

Physcomitrella patens ppt-MIR1053 precursor miRNA

Sequence

aacuuuuuaacuucgagccagccugugaGAUGGGUUAUCUCAAAGUGGACUUucucucugucuuggcuugaaCUCUACUUUGACAUAGCCCACUucaaagguaacuugaauacacucaaaa
...........((((((...((((.((((.((((((((.((((((((((.(((...((......))...))).)))))))))).)))))))).)))).))))..))))))...........

Structure

aacuuuuuaac      cca    g    A        C          C   cuc  ug 
           uucgag   gccu ugaG UGGGUUAU UCAAAGUGGA UUu   uc  u
           ||||||   |||| |||| |||||||| |||||||||| |||   ||   
           aaguuc   ugga acuU ACCCGAUA AGUUUCAUCU aag   gg  c
aaaacucacau      -aa    a    C        C          C   uuc  uu 

Annotation confidence Not enough data

Genome context

Chr01: 5929306-5929426 [-]

Mature ppt-miR1053-5p

• Accession: MIMAT0005170
• Description: Physcomitrella patens ppt-miR1053-5p mature miRNA
• Sequence: 29 - GAUGGGUUAUCUCAAAGUGGACUU - 52
• Evidence: experimental ; 454 [1]

Mature ppt-miR1053-3p

• Accession: MIMAT0005171
• Description: Physcomitrella patens ppt-miR1053-3p mature miRNA
• Sequence: 73 - CUCUACUUUGACAUAGCCCACU - 94
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769