Accession
MI0006013
Description
Physcomitrella patens
ppt-MIR1054 precursor miRNA
Sequence
23678
reads,
1002.0
reads per million, 10 experiments
gcgacauggauuccaauuuuggaggcaaagggaGGAGUAGAAGGGAGGGCUUAACUCGacaucugaaagcauugguugcaugcuguguucuucaaccugacgguguucugcagcaaugcacaccuucugaugacguugcugcggacacucgguucaaguaggaucacuguuaccaacgccggucugugucacagUAAACCCUCUCUCUAUUCCUGucuuugccuuacaaacauguaccugggacg
...(((((.........((((((((((((((.(((((((((.(((((((.(((....(((((..((..((.(((((.(((....(((.((((..((.(((((((((.(((((((((((((((.....)).)).))))))))))))))).))..))).)))))).)))))).))))).))...)).)))))....))).)))))))))))))))).)))))))))).)))))))))..........
...(((((.........((((((((((((((.(((((((((.(((((((.(((....(((((..((..((.(((((.(((....(((.((((..((.(((((((((.(((((((((((((((.....)).)).))))))))))))))).))..))).)))))).)))))).))))).))...)).)))))....))).)))))))))))))))).)))))))))).)))))))))..........
Structure
-------gcg gauuccaau - g A C ACUC cu -aa a u ugcu u ca c -- - u - - c
acaug uuug gaggcaaagg aGGAGUAGA GGGAGGG UUA Gacau ga gc uuggu gca gug ucuu ac uga cg gugu cugcagcaaug ca ca c
||||| |||| |||||||||| ||||||||| ||||||| ||| ||||| || || ||||| ||| ||| |||| || ||| || |||| ||||||||||| || || u
uguac aaac uuccguuucu UCCUUAUCU CUCUCCC AAU cugug cu cg aacca ugu cac agga ug acu gc caca ggcgucguugc gu gu u
gcagggucca --------- a G - A gaca -u ggc c u ---- u -- a ug u - a a c
Annotation confidence
High
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Genome context
Chr03: 23795583-23795827 [-]
Database links
Mature ppt-miR1054-5p
| Accession | MIMAT0053756 |
| Description | Physcomitrella patens ppt-miR1054-5p mature miRNA |
| Sequence | 34 - GGAGUAGAAGGGAGGGCUUAACUCG - 58 |
| Evidence |
experimental
unknown |
Mature ppt-miR1054-3p
| Accession | MIMAT0005172 |
| Description | Physcomitrella patens ppt-miR1054-3p mature miRNA |
| Sequence | 195 - UAAACCCUCUCUCUAUUCCUG - 215 |
| Evidence |
experimental
454 [1] |
References
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