Accession
MI0006015
Description
Physcomitrella patens
ppt-MIR1056 precursor miRNA
Sequence
537
reads,
23.0
reads per million, 10 experiments
guccaugguaggaaaccuaaaacaAAGCCCAGGGUUAUGUUGCAAaaauccaggugauguaaguaaaaguccaagugaagaaacuuaccucaccUGGAUCUUUGCAUCAUAACCCugggcuuuauuuugguaaucuuauuacgga
.(((.((((((((...((((((.((((((((((((((((.((((((.((((((((((.((((((.....((.....))....)))))).)))))))))).)))))).)))))))))))))))).))))))...)))))))).)))
.(((.((((((((...((((((.((((((((((((((((.((((((.((((((((((.((((((.....((.....))....)))))).)))))))))).)))))).)))))))))))))))).))))))...)))))))).)))
Structure
g a aac c U a u aaaag c ucc ugguagga cuaaaa aAAGCCCAGGGUUAUG UGCAAa auccagguga guaagu uc a ||| |||||||| |||||| |||||||||||||||| |||||| |||||||||| |||||| || a agg auuauucu gguuuu uuucggguCCCAAUAC ACGUUU UAGGUccacu cauuca ag g - c aau a U C c -aaga u
Annotation confidence
Medium
Do you think this miRNA is real?
Genome context
Chr17: 1953900-1954044 [-]
Database links
Mature ppt-miR1056-5p
| Accession | MIMAT0053758 |
| Description | Physcomitrella patens ppt-miR1056-5p mature miRNA |
| Sequence | 25 - AAGCCCAGGGUUAUGUUGCAA - 45 |
| Evidence |
experimental
unknown |
Mature ppt-miR1056-3p
| Accession | MIMAT0005174 |
| Description | Physcomitrella patens ppt-miR1056-3p mature miRNA |
| Sequence | 95 - UGGAUCUUUGCAUCAUAACCC - 115 |
| Evidence |
experimental
454 [1] |
References
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