Stem-loop ppt-MIR1056

Accession

MI0006015

Description

Physcomitrella patens ppt-MIR1056 precursor miRNA

Sequence

guccaugguaggaaaccuaaaacaaagcccaggguuauguugcaaaaauccaggugauguaaguaaaaguccaagugaagaaacuuaccucaccUGGAUCUUUGCAUCAUAACCCugggcuuuauuuugguaaucuuauuacgga
.(((.((((((((...((((((.((((((((((((((((.((((((.((((((((((.((((((.....((.....))....)))))).)))))))))).)))))).)))))))))))))))).))))))...)))))))).)))

Structure

g   a        aac      c                u      a          u      aaaag  c 
 ucc ugguagga   cuaaaa aaagcccaggguuaug ugcaaa auccagguga guaagu     uc a
 ||| ||||||||   |||||| |||||||||||||||| |||||| |||||||||| ||||||     || a
 agg auuauucu   gguuuu uuucggguCCCAAUAC ACGUUU UAGGUccacu cauuca     ag g
-   c        aau      a                U      C          c      -aaga  u 

Annotation confidence Not enough data

Genome context

Chr17: 1953900-1954044 [-]

Mature ppt-miR1056

• Accession: MIMAT0005174
• Description: Physcomitrella patens ppt-miR1056 mature miRNA
• Sequence: 95 - UGGAUCUUUGCAUCAUAACCC - 115
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769