Accession
MI0006018
Description
Physcomitrella patens
ppt-MIR1059 precursor miRNA
Sequence
736
reads,
32.0
reads per million, 10 experiments
ugcgaggcaaccuugaucccauuacgacgUGAAAGUCCUUCACAAACAACaguguuuaaaggaaucaccuagaagucauuguguaggagcuuggugggcgaucuaauugcaaucaaggaccgcccagucgcuaccauuuaacgccauccuccgaccugggacucgcguugUUUGUGGAGGACUUUCACGCCguaaugagaucacuaguucuguuu
...((((...))))((((.(((((((.((((((((((((((((((((((((((((((..(((.....)))..))).))))))...(((((..(.((((((.(((..(((....)))))).)))))).).))).)).....((((..((((.......))))...))))))))))))))))))))))))).))))))).)))).............
...((((...))))((((.(((((((.((((((((((((((((((((((((((((((..(((.....)))..))).))))))...(((((..(.((((((.(((..(((....)))))).)))))).).))).)).....((((..((((.......))))...))))))))))))))))))))))))).))))))).)))).............
Structure
ugcgaggcaaccuu c a -------------------------------------------------------------------------------------- - aa a
gauc cauuacg cgUGAAAGUCCUUCACAAACA ACagug uuu agg a
|||| ||||||| ||||||||||||||||||||| |||||| ||| ||| u
cuag guaaugC GCACUUUCAGGAGGUGUUUgu uguuac gaa ucc c
-uuugucuugauca a C ugcgcucaggguccagccuccuaccgcaauuuaccaucgcugacccgccaggaacuaacguuaaucuagcgggugguucgaggaug u ga a
Annotation confidence
Medium
Do you think this miRNA is real?
Genome context
Chr16: 1682293-1682507 [-]
Database links
Mature ppt-miR1059-5p
| Accession | MIMAT0005177 |
| Description | Physcomitrella patens ppt-miR1059-5p mature miRNA |
| Sequence | 30 - UGAAAGUCCUUCACAAACAAC - 50 |
| Evidence |
experimental
454 [1] |
Mature ppt-miR1059-3p
| Accession | MIMAT0053761 |
| Description | Physcomitrella patens ppt-miR1059-3p mature miRNA |
| Sequence | 171 - UUUGUGGAGGACUUUCACGCC - 191 |
| Evidence |
experimental
unknown |
References
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