Stem-loop ppt-MIR1061

Accession

MI0006020

Description

Physcomitrella patens ppt-MIR1061 precursor miRNA

Sequence

gugcugggcacgcaauaagcaugugagcaUUAUUUCAUAGACUACUCAAAccucucaaagguagggauagaccucugagaugcuuUGAGUAGUCAAUGGAAUAAUGaugcuguccauaaacuugaugugugg
........((((((.((((..(((((((((((((((((.((((((((((((.(((((.((((........)))).))))).).))))))))))).)))))...))))))))...))))..)))).)))))).

Structure

gugcuggg      a    ca    ---        ---     A           - c     a    agg 
        cacgca uaag  ugug   agcaUUAU   UUCAU GACUACUCAAA c ucuca aggu   g
        |||||| ||||  ||||   ||||||||   ||||| ||||||||||| | ||||| ||||    
        gugugu guuc  auac   ucguaGUA   AGGUA CUGAUGAGUuu g agagu ucca   a
-------g      a    aa    cug        AUA     A           c u     c    gau 

Annotation confidence Not enough data

Genome context

Chr05: 5936169-5936300 [+]

Mature ppt-miR1061-5p

• Accession: MIMAT0005179
• Description: Physcomitrella patens ppt-miR1061-5p mature miRNA
• Sequence: 30 - UUAUUUCAUAGACUACUCAAA - 50
• Evidence: experimental ; 454 [1]

Mature ppt-miR1061-3p

• Accession: MIMAT0005180
• Description: Physcomitrella patens ppt-miR1061-3p mature miRNA
• Sequence: 86 - UGAGUAGUCAAUGGAAUAAUG - 106
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769