Accession
MI0006021
Description
Physcomitrella patens
ppt-MIR1062 precursor miRNA
Sequence
251
reads,
11.0
reads per million, 10 experiments
cgaguucgcuuugcacgggguuguugucgUCCCUCACGUGGUGUUUGCAGCuaggaugucgggaggggucgauguguuguggaauguuccgcuccuugaaauuugagugacccuuaccgucugccagugaggccgcuUGCAAACACCCGUAUGGGACGacgaagcucugguguugcucaacauc
.((((..((...((.(((((((.((((((((((..(((.((((((((((((......(.(((..(((((((....(..(((((....)))))..)............)))))))..))).).(((.....))).)).)))))))))))))..))))))))))))))))))))).))))......
.((((..((...((.(((((((.((((((((((..(((.((((((((((((......(.(((..(((((((....(..(((((....)))))..)............)))))))..))).).(((.....))).)).)))))))))))))..))))))))))))))))))))).))))......
Structure
-----c uc uuu a g UC U - -------uaggau u ga --------augu uu a
gagu gc gc cgggguu uugucgUCCC ACG GGUGUUUGCA GC g cgg ggggucg g gugga u
|||| || || ||||||| |||||||||| ||| |||||||||| || | ||| ||||||| | |||||
cucg ug ug gucucga agcaGCAGGG UGC CCACAAACGU cg c gcc ucccagu c cgccu g
cuacaa -u --- - - UA - u ccggagugaccgu u au gaguuuaaaguu cu u
Annotation confidence
High
Do you think this miRNA is real?
Genome context
Chr23: 12810997-12811180 [+]
Database links
Mature ppt-miR1062-5p
| Accession | MIMAT0005181 |
| Description | Physcomitrella patens ppt-miR1062-5p mature miRNA |
| Sequence | 30 - UCCCUCACGUGGUGUUUGCAGC - 51 |
| Evidence |
experimental
454 [1] |
Mature ppt-miR1062-3p
| Accession | MIMAT0053762 |
| Description | Physcomitrella patens ppt-miR1062-3p mature miRNA |
| Sequence | 138 - UGCAAACACCCGUAUGGGACG - 158 |
| Evidence |
experimental
unknown |
References
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