Accession
MI0006023
Description
Physcomitrella patens
ppt-MIR1063b precursor miRNA
Sequence
16221
reads,
658.0
reads per million, 10 experiments
agaguuacuugugcuucguaguucacuuaCAUCUUGGAGUACUGCAUCUUcagaucugugagucuucgccgccuauugccuucgccaccaugcuugacgaaugguuugaaacugaucacauccaacuugaacggauauccugccccuucauagugcugugauuccguucaagcaguucaguuguccgacaaccauggugugguaggacaguaguacugcuaaggcuuugacauuuugaAGAUGCAGCACUACAAGAAGUGUgugagcaacgggcuggauucaagau
.(((((......(((.(((.((((((.(((.(((((.(((.(((((((((((((..((((((((((.((...(((((((((((((.((((((.(((.((.(((..(((((.(((...........((((((((((.((((.((..((....)).)).).))))))))))))))))))))).))).)).))).)))))))))).))).))))))....)).)))))))..))).))))))))))))).))).))))).))).)))))).))))))..))))).....
.(((((......(((.(((.((((((.(((.(((((.(((.(((((((((((((..((((((((((.((...(((((((((((((.((((((.(((.((.(((..(((((.(((...........((((((((((.((((.((..((....)).)).).))))))))))))))))))))).))).)).))).)))))))))).))).))))))....)).)))))))..))).))))))))))))).))).))))).))).)))))).))))))..))))).....
Structure
----a acuugu u a u A G A uc -- c -cgc - - c c a a gu a aucacauccaa u - u cc u
gaguu gcu cgu guucac uaC UCUUG AGU CUGCAUCUUcaga ugu gagucuu gc cuauug ccu ucgc accaug uug cg aug uugaa cug cuugaacgga auc c gc cu c
||||| ||| ||| |||||| ||| ||||| ||| ||||||||||||| ||| ||||||| || |||||| ||| |||| |||||| ||| || ||| ||||| ||| |||||||||| ||| | || ||
cuuag cgg gca cgagug GUG AGAAC UCA GACGUAGAaguuu aca uucggaa cg gaugac gga ggug ugguac aac gc ugu gacuu gac gaacuugccu uag g cg ga a
uagaa ----gu - a U A A C -u gu u ucau a u - c a c -u - ----------- - u u -u u
Annotation confidence
High
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Genome context
Chr02: 14360540-14360825 [+]
Database links
Mature ppt-miR1063b-5p
| Accession | MIMAT0005183 |
| Description | Physcomitrella patens ppt-miR1063b-5p mature miRNA |
| Sequence | 30 - CAUCUUGGAGUACUGCAUCUU - 50 |
| Evidence |
experimental
454 [1] |
Mature ppt-miR1063b-3p
| Accession | MIMAT0053763 |
| Description | Physcomitrella patens ppt-miR1063b-3p mature miRNA |
| Sequence | 239 - AGAUGCAGCACUACAAGAAGUGU - 261 |
| Evidence |
experimental
unknown |
References
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