Accession
MI0006025
Description
Physcomitrella patens
ppt-MIR1063d precursor miRNA
Sequence
acuacacuuauugccuuuuugcccacccuCAUCUUGGAGUACUGCAUCUUcaugucggcugcuuuucaugucuggcuacgagguugcucaugugauuagguuugauccauguuaggcuuuagguuguaucagugaauuagugucgacaguuaggagugaaacuuuuuuuagcuguugauacgcgggaguuaugggauucucauuucaacacaauguaaucuugugucaauccagccuaugcuuguagaguuacugagucacaugagcacaucgaaugccuuugaggcuuugaaauucuaccgacgaguagaugcagaacuacaagaagcgaguggguaacaggcuauuuuucaaga
............((((..((((((((.(.(.(((((.(((.((((((((.(.((((((..(..(((((.(((((((..(((.((.((((((((((((.(((....((.....(((((..(((((((.............(((((((((((((((((........)))))))))))))))))..(((((((....)))))))......((((((.......)))))).....))))))).)))))..))...))).)))))))))))))).)))...)))....))))..)))))..)..)))))).).)))))))).))).))))).).).)))))))).))))............
............((((..((((((((.(.(.(((((.(((.((((((((.(.((((((..(..(((((.(((((((..(((.((.((((((((((((.(((....((.....(((((..(((((((.............(((((((((((((((((........)))))))))))))))))..(((((((....)))))))......((((((.......)))))).....))))))).)))))..))...))).)))))))))))))).)))...)))....))))..)))))..)..)))))).).)))))))).))).))))).).).)))))))).))))............
Structure
acuacacuuauu uu c u A G A U a cu cu -u ---- -ua g u a uuga caugu uu -------------------------------------uaucagugaauua uga
gccu uugcccac c C UCUUG AGU CUGCAUCU c ugucgg g uuuca gucu ggc cga gu gcucaugugauu ggu uc uaggc uagguug gugucgacaguuaggag a
|||| |||||||| | | ||||| ||| |||||||| | |||||| | ||||| |||| ||| ||| || |||||||||||| ||| || ||||| ||||||| |||||||||||||||||
cgga aaugggug g g agaac uca gacguaga g gcagcc c aaagu cgga ccg gcu ca cgaguacacuga uca ag guucg auccgac cauaguugucgauuuuu a
agaacuuuuuau -c a c a a a u a au uu uu guuu uaa a - g -uug ---au -u cuaacuguguucuaauguaacacaacuuuacucuuaggguauugagggcg uuc
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
Chr22: 9278038-9278393 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ppt-MIR1063d
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppt-miR1063d
| Accession | MIMAT0005185 |
| Description | Physcomitrella patens ppt-miR1063d mature miRNA |
| Sequence | 30 - CAUCUUGGAGUACUGCAUCUU - 50 |
| Evidence |
experimental
454 [1] |
References
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