Accession
MI0006026
Description
Physcomitrella patens
ppt-MIR1063e precursor miRNA
Sequence
15408
reads,
625.0
reads per million, 10 experiments
caccgcaugcucgccuugcuggucacccuCAUCUUGGAGUACUGCAUCUUcacaucuguagcccuucaucuaagucucaggcagcacuagugcuguaguuucagccgaauucuugguauucgagaauuuaugaaugaggcacugagcacaccaaaagaggucagagauuggggauucuacugaugggcaGAUGCAGAACUGCAAGAAGCGagugggcagcaggcuauguucauucg
....(((((...((((.((((.((((.(.(.(((((.(((.((((((((((.((((.((((((((..((((..(((((((((((((....)))))).((((((..((((((((((.....)))))))))..)..)))))).))))).))(((......)))...)))).))))...)))).)))))).)))))))).))).))))).).).)))).))))))))))))).......
....(((((...((((.((((.((((.(.(.(((((.(((.((((((((((.((((.((((((((..((((..(((((((((((((....)))))).((((((..((((((((((.....)))))))))..)..)))))).))))).))(((......)))...)))).))))...)))).)))))).)))))))).))).))))).).).)))).))))))))))))).......
Structure
---cacc cuc u g c u A G A - a u --- uc -------------aa - gcagcacuagugcugua gc -- g
gcaug gccu gcug ucac c C UCUUG AGU CUGCAUCU Uc cauc guag cccu aucu gu cucag guuuca c gaauucuug u
||||| |||| |||| |||| | | ||||| ||| |||||||| || |||| |||| |||| |||| || ||||| |||||| | ||||||||| a
uguau cgga cgac ggug G G AGAAC UCA GACGUAGa gg guag cauc gggg uaga ca gaguc cggagu g uuuaagagc u
gcuuacu --- - g a C A G A c - u uua -u gacuggagaaaacca c ----------------a aa ua u
Annotation confidence
High
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Genome context
Chr22: 9283849-9284084 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppt-MIR1063e
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppt-miR1063e-5p
| Accession | MIMAT0005186 |
| Description | Physcomitrella patens ppt-miR1063e-5p mature miRNA |
| Sequence | 30 - CAUCUUGGAGUACUGCAUCUU - 50 |
| Evidence |
experimental
454 [1] |
Mature ppt-miR1063e-3p
| Accession | MIMAT0053765 |
| Description | Physcomitrella patens ppt-miR1063e-3p mature miRNA |
| Sequence | 190 - GAUGCAGAACUGCAAGAAGCG - 210 |
| Evidence |
experimental
unknown |
References
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