Accession
MI0006027
Description
Physcomitrella patens
ppt-MIR1063f precursor miRNA
Sequence
16202
reads,
658.0
reads per million, 10 experiments
ggagguuuuaaagcucugucgcucacuuaCAUCUUGGAGUACUGCAUCUUcacauucgucagauuuuucuaucuguugucauauccccggaauuuugaaucagguacauaccuagcaucuucagauaagcacgugaucacguucauacggaucagucgcuaacucucuuacggagagcauagugugguuugauaacaguggugcagaagcucugcgaaguugaAGAUGCAGCACUACAAGAAGUGcgugagcgacgggcuauaugaaagac
.....(((((.(((.(((((((((((.(((.(((((.(((.(((((((((((..((((.((((((((((((.(((((((((.(((........((((((..((((....))))......))))))..(((((.(((((.(((....)))))))))).)))..((((((...))))))........))).))))))))))))...))))).))))))))..))))))))))).))).))))).))).))))))))))))))...)))))...
.....(((((.(((.(((((((((((.(((.(((((.(((.(((((((((((..((((.((((((((((((.(((((((((.(((........((((((..((((....))))......))))))..(((((.(((((.(((....)))))))))).)))..((((((...))))))........))).))))))))))))...))))).))))))))..))))))))))).))).))))).))).))))))))))))))...)))))...
Structure
ggagg --a u u A G A ca u - --- u u cccggaauuuugaaucagguacauaccuagcaucuucagaua - g a u
uuuua agc cugucgcucac uaC UCUUG AGU CUGCAUCUUca uucg caga uuuuu cua cuguuguca auc agc ac ugauc cgu c
||||| ||| ||||||||||| ||| ||||| ||| ||||||||||| |||| |||| ||||| ||| ||||||||| ||| ||| || ||||| |||
aaagu ucg ggcagcgagug GUG AGAAC UCA GACGUAGAagu aagc gucu gaaga ggu gacaauagu ugg ucg ug acuag gca a
--cag aua - c A A C ug - c cgu - u -----------------ugugauacgagaggcauucucucaa c - - u
Annotation confidence
High
Do you think this miRNA is real?
Genome context
Chr01: 12384999-12385269 [+]
Database links
Mature ppt-miR1063f-5p
| Accession | MIMAT0005187 |
| Description | Physcomitrella patens ppt-miR1063f-5p mature miRNA |
| Sequence | 30 - CAUCUUGGAGUACUGCAUCUU - 50 |
| Evidence |
experimental
454 [1] |
Mature ppt-miR1063f-3p
| Accession | MIMAT0053766 |
| Description | Physcomitrella patens ppt-miR1063f-3p mature miRNA |
| Sequence | 224 - AGAUGCAGCACUACAAGAAGUG - 245 |
| Evidence |
experimental
unknown |
References
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