Stem-loop ppt-MIR1063f

Accession

MI0006027

Description

Physcomitrella patens ppt-MIR1063f precursor miRNA

Sequence

ggagguuuuaaagcucugucgcucacuuaCAUCUUGGAGUACUGCAUCUUcacauucgucagauuuuucuaucuguugucauauccccggaauuuugaaucagguacauaccuagcaucuucagauaagcacgugaucacguucauacggaucagucgcuaacucucuuacggagagcauagugugguuugauaacaguggugcagaagcucugcgaaguugaagaugcagcacuacaagaagugcgugagcgacgggcuauaugaaagac
.....(((((.(((.(((((((((((.(((.(((((.(((.(((((((((((..((((.((((((((((((.(((((((((.(((........((((((..((((....))))......))))))..(((((.(((((.(((....)))))))))).)))..((((((...))))))........))).))))))))))))...))))).))))))))..))))))))))).))).))))).))).))))))))))))))...)))))...

Structure

ggagg     --a   u           u   A     G   A           ca    u    -     ---   u         u   cccggaauuuugaaucagguacauaccuagcaucuucagaua   -  g     a   u 
     uuuua   agc cugucgcucac uaC UCUUG AGU CUGCAUCUUca  uucg caga uuuuu   cua cuguuguca auc                                          agc ac ugauc cgu c
     |||||   ||| ||||||||||| ||| ||||| ||| |||||||||||  |||| |||| |||||   ||| ||||||||| |||                                          ||| || ||||| |||  
     aaagu   ucg ggcagcgagug gug agaac uca gacguagaagu  aagc gucu gaaga   ggu gacaauagu ugg                                          ucg ug acuag gca a
--cag     aua   -           c   a     a   c           ug    -    c     cgu   -         u   -----------------ugugauacgagaggcauucucucaa   c  -     -   u 

Annotation confidence Not enough data

Genome context

Chr01: 12384999-12385269 [+]

Mature ppt-miR1063f

• Accession: MIMAT0005187
• Description: Physcomitrella patens ppt-miR1063f mature miRNA
• Sequence: 30 - CAUCUUGGAGUACUGCAUCUU - 50
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769