Stem-loop ppt-MIR1064

Accession

MI0006030

Description

Physcomitrella patens ppt-MIR1064 precursor miRNA

Sequence

acguacagggcaaucaacgauuucgagggCAUUCUGAGAAUAAUCAUCCGaaugcagcagcccgggcGGGUGAUUAUUCUCAGAGUUCccaagggagcguggaucgaccggcgua
((((...((.(.(((.(((.((((..(((.((((((((((((((((((((...((....)).....)))))))))))))))))))).)))..)))).))).))).).)).)))).

Structure

-    aca  g a   a   a    ga   C                    --aau  a 
 acgu   gg c auc acg uuuc  ggg AUUCUGAGAAUAAUCAUCCG     gc g
 ||||   || | ||| ||| ||||  ||| ||||||||||||||||||||     ||  
 ugcg   cc g uag ugc aggg  ccC UGAGACUCUUAUUAGUGGGc     cg c
a    --g  a c   g   g    aa   U                    gggcc  a 

Annotation confidence Not enough data

Genome context

Chr17: 6870862-6870976 [-]

Mature ppt-miR1064-5p

• Accession: MIMAT0005190
• Description: Physcomitrella patens ppt-miR1064-5p mature miRNA
• Sequence: 30 - CAUUCUGAGAAUAAUCAUCCG - 50
• Evidence: experimental ; 454 [1]

Mature ppt-miR1064-3p

• Accession: MIMAT0005191
• Description: Physcomitrella patens ppt-miR1064-3p mature miRNA
• Sequence: 68 - GGGUGAUUAUUCUCAGAGUUC - 88
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769