Stem-loop ppt-MIR1069

Accession

MI0006035

Description

Physcomitrella patens ppt-MIR1069 precursor miRNA

Sequence

uguucuucaagcacauguccacuucauguUCUCAAGUCUUAUCAUUGGAUugagcaccuuggucuuucaaauauucuauuaugauauguugauauauaauuggucuuucaaguauuuucucauuaauaugaaaacauauuauuacaaaauauuuuugcauauuauuguaguauacuUGAUAAAUCAAAGUGCUCACUguaaugauaaagcuugagaacaugaagucuacuugacuucuacuuug
.............((.((..(((((((((((((((((.(((((((((.(.(((((((.(((((...((((.(((.((((.(((((((((.((((((((((..((.(((((..((((........)))))))))))..)))))......)))))...))))))))).)))).))).))))...))))).))))))).).))))))))).)))))))))))))))))..)).))............

Structure

uguucuucaagca  u  cc                 C         G U       c     cuu    a   u    u         --u     ------     ug  c     ag    uuc 
             ca gu  acuucauguUCUCAAGU UUAUCAUUG A ugagcac uuggu   ucaa uau cuau augauaugu   gauau      auaau  gu uuuca  uauu   u
             || ||  ||||||||||||||||| ||||||||| | ||||||| |||||   |||| ||| |||| |||||||||   |||||      |||||  || |||||  ||||    
             gu ca  ugaaguacaagaguucg aauaguaau U ACUCGUG AACUA   AGUu aua gaug uauuauacg   uuaua      uauua  ca aaagu  auaa   c
-guuucaucuuca  u  uc                 a         g C       A     AAU    c   u    u         uuu     aaacau     ua  -     --    uua 

Annotation confidence Not enough data

Genome context

Chr05: 706260-706503 [+]

Mature ppt-miR1069-5p

• Accession: MIMAT0005196
• Description: Physcomitrella patens ppt-miR1069-5p mature miRNA
• Sequence: 30 - UCUCAAGUCUUAUCAUUGGAU - 50
• Evidence: experimental ; 454 [1]

Mature ppt-miR1069-3p

• Accession: MIMAT0005197
• Description: Physcomitrella patens ppt-miR1069-3p mature miRNA
• Sequence: 177 - UGAUAAAUCAAAGUGCUCACU - 197
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769