Stem-loop ppt-MIR1071

Accession

MI0006037

Description

Physcomitrella patens ppt-MIR1071 precursor miRNA

Sequence

gugaacuaugucgcgacgagauaggacccGCGCAAUUCCCGAACGGGUAGaagaaccggaucuaaaaaugcgcgggucggguucuuccACCCGUUCUGGAAUUGCGCGGguuccuguccccacaagcaacgaaaa
((((......)))).....((((((((((((((((((((.((((((((.((((((((.(((((..........))))).)))))))).)))))))).))))))))))))).))))))).................

Structure

gugaacuaugucgcgacga       -             C        A        g     aaaa 
                   gauagga cccGCGCAAUUCC GAACGGGU Gaagaacc gaucu    a
                   ||||||| ||||||||||||| |||||||| |||||||| |||||     
                   cuguccu gGGCGCGUUAAGG CUUGCCCA cuucuugg cuggg    u
--aaaagcaacgaacaccc       u             U        c        g     cgcg 

Annotation confidence Not enough data

Genome context

Chr03: 13102663-13102797 [+]

Mature ppt-miR1071-5p

• Accession: MIMAT0005199
• Description: Physcomitrella patens ppt-miR1071-5p mature miRNA
• Sequence: 30 - GCGCAAUUCCCGAACGGGUAG - 50
• Evidence: experimental ; 454 [1]

Mature ppt-miR1071-3p

• Accession: MIMAT0005200
• Description: Physcomitrella patens ppt-miR1071-3p mature miRNA
• Sequence: 89 - ACCCGUUCUGGAAUUGCGCGG - 109
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769