miRBase entry: ppt-MIR1072

Stem-loop ppt-MIR1072


Accession
MI0006038
Description
Physcomitrella patens ppt-MIR1072 precursor miRNA


Sequence

888 reads, 33.0 reads per million, 10 experiments
aauuuguucuaaucuuaugagauggauauguucAAGCUUCUAGUUUCACAAUGUGAUaauuuuaaauaauuguuuuuguaaucaaaguaugaauuuuaugauuuuauauuucauucuaauuucuuaaaaauaauguugguuguuuuuguagaauuauuuuauaaauacauauuguaaaaucucuauguuauaugaaaaaauaucuuuuaaaauuuaaaucccaauaaaaauaugacaauacaauuauuuugauauUGCAUUGUGUUAUUUGAAGCUUGAaaauaggccaucuuuaaaauuagaacuaau
.....((((((((.(((.(((((((.(((.((((((((((.(((..((((((((((((.....((((((((((...........(((((((((.........))))))))).........((((((((((((((....)))))))))).))))..(((((((((.......))))))))).....((((((((............(((((...)))))...........))))))))..))))))))))...))))))))))))..))).)))))))))).)))..)))))))))).))))))))....

Structure
aauuu        c   u       -a   g          U   UU            auuuu          ---------------------------------------uuuuguaaucaaaguaugaauuuuaugauuuuauauuucauucuaau    -          g 
     guucuaau uua gagaugg  uau uucAAGCUUC AGU  CACAAUGUGAUa     aaauaauugu                                                                                      uucu uaaaaauaau u
     |||||||| ||| |||||||  ||| |||||||||| |||  ||||||||||||     ||||||||||                                                                                      |||| ||||||||||  
     caagauua aau uucuacc  aua aAGUUCGAAG UUA  GUGUUACGUuau     uuuauuaaca                                                                                      aaga guuuuuguug u
-uaau        a   -       gg   a          U   UU            --agu          uaacaguauaaaaauaacccuaaauuuaaaauuuucuauaaaaaaguauauuguaucucuaaaauguuauacauaaauauuuuauu    u          g 


Annotation confidence High
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ppt-miR1072-5p

Accession MIMAT0053772
Description Physcomitrella patens ppt-miR1072-5p mature miRNA
Sequence 34 - AAGCUUCUAGUUUCACAAUGUGAU - 57
Evidence experimental
unknown

Mature ppt-miR1072-3p

Accession MIMAT0005201
Description Physcomitrella patens ppt-miR1072-3p mature miRNA
Sequence 256 - UGCAUUGUGUUAUUUGAAGCUUGA - 279
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769