Accession
MI0006039
Description
Physcomitrella patens
ppt-MIR1073 precursor miRNA
Sequence
gcagacugauuuuaacguggaagaaugaacacaUGAAUGAUAUUAACGUCCACGauguaaaucuaaugcagaauuguugcugggauuaacuucaguuucagacacaaaguuaaugacuguggaaacccaguucacuacugugcuacuucgUGGGCGUUAAUACAUUUCAUAuguucacucuaccauucaaucgucuggacu
.(((((.((((.....((((.(((.((((((.(((((((.(((((((((((((((.(((........(((.(...((.((((((.....((.(((((...(((.....)))...))))).))...))))))..))...).)))))).))))))))))))))))).))))).)))))).))).))))..)))))))))....
.(((((.((((.....((((.(((.((((((.(((((((.(((((((((((((((.(((........(((.(...((.((((((.....((.(((((...(((.....)))...))))).))...))))))..))...).)))))).))))))))))))))))).))))).)))))).))).))))..)))))))))....
Structure
---g u uuaac a a c - A u aaucuaau g auu -u auuaa u uca a
cagac gauu gugg aga ugaaca aUGAA UG UAUUAACGUCCACGa gua gca a gu gcuggg cu caguu gac c
||||| |||| |||| ||| |||||| ||||| || ||||||||||||||| ||| ||| | || |||||| || ||||| ||| a
gucug cuaa uacc ucu acuugu UACUU AC AUAAUUGCGGGUgcu cau cgu u ca ugaccc gg gucag uug a
ucag - ---cu a c A U - u -------- g cau cu --aaa u uaa a
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
Chr17: 9265541-9265741 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppt-MIR1073
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppt-miR1073-5p
| Accession | MIMAT0005202 |
| Description | Physcomitrella patens ppt-miR1073-5p mature miRNA |
| Sequence | 34 - UGAAUGAUAUUAACGUCCACG - 54 |
| Evidence |
experimental
454 [1] |
Mature ppt-miR1073-3p
| Accession | MIMAT0005203 |
| Description | Physcomitrella patens ppt-miR1073-3p mature miRNA |
| Sequence | 151 - UGGGCGUUAAUACAUUUCAUA - 171 |
| Evidence |
experimental
454 [1] |
References
|
