Stem-loop ppt-MIR1073

Accession

MI0006039

Description

Physcomitrella patens ppt-MIR1073 precursor miRNA

Sequence

gcagacugauuuuaacguggaagaaugaacacaUGAAUGAUAUUAACGUCCACGauguaaaucuaaugcagaauuguugcugggauuaacuucaguuucagacacaaaguuaaugacuguggaaacccaguucacuacugugcuacuucgUGGGCGUUAAUACAUUUCAUAuguucacucuaccauucaaucgucuggacu
.(((((.((((.....((((.(((.((((((.(((((((.(((((((((((((((.(((........(((.(...((.((((((.....((.(((((...(((.....)))...))))).))...))))))..))...).)))))).))))))))))))))))).))))).)))))).))).))))..)))))))))....

Structure

---g     u    uuaac    a   a      c     -  A               u   aaucuaau   g auu  -u      auuaa  u     uca   a 
    cagac gauu     gugg aga ugaaca aUGAA UG UAUUAACGUCCACGa gua        gca a   gu  gcuggg     cu caguu   gac c
    ||||| ||||     |||| ||| |||||| ||||| || ||||||||||||||| |||        ||| |   ||  ||||||     || |||||   ||| a
    gucug cuaa     uacc ucu acuugu UACUU AC AUAAUUGCGGGUgcu cau        cgu u   ca  ugaccc     gg gucag   uug a
ucag     -    ---cu    a   c      A     U  -               u   --------   g cau  cu      --aaa  u     uaa   a 

Annotation confidence Not enough data

Genome context

Chr17: 9265541-9265741 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR1073

Mature ppt-miR1073-5p

• Accession: MIMAT0005202
• Description: Physcomitrella patens ppt-miR1073-5p mature miRNA
• Sequence: 34 - UGAAUGAUAUUAACGUCCACG - 54
• Evidence: experimental ; 454 [1]

Mature ppt-miR1073-3p

• Accession: MIMAT0005203
• Description: Physcomitrella patens ppt-miR1073-3p mature miRNA
• Sequence: 151 - UGGGCGUUAAUACAUUUCAUA - 171
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769