miRBase entry: ppt-MIR1076

Stem-loop ppt-MIR1076


Accession
MI0006042
Description
Physcomitrella patens ppt-MIR1076 precursor miRNA


Sequence

gcgaaagcuauucaaacgugguguugUAUCACAAGGUGCGAUAAUUGcucgaagacauuggcaguuaagauauuuuagccccaugaaaauguggguuagauguaagaguagaaguguagggauuuguacguaguguuaauguagcugugcauugucaauucugaguuccaaaaucuCCAAGCACUUAUCGCACCCUGcgauacaacauacacaguugcaagauggaa
.......(((((..((((((((((((((((.((.((((((((((.((((.(.(((..((((.(.(((.((...(((((((((((....))).)))))))).......(((.((((......)))).)))....((.(((((((....))))))).))..))))).).))))..))).).)))).)))))))))).)).)))))))))).))).)))....)))))..

Structure
gcgaaag     --ca   -   -          A  A          U    c a   ca    c g   a  --------------------------------------------------------uau        -   g 
       cuauu    aac gug guguugUAUC CA GGUGCGAUAA UGcu g aga  uugg a uua ga                                                           uuuagccc cau a
       |||||    ||| ||| |||||||||| || |||||||||| |||| | |||  |||| | ||| ||                                                           |||||||| |||  
       gguag    uug cac uacaacauag GU CCACGCUAUU ACGA C ucu  aacc u agu cu                                                           agauuggg gua a
-----aa     aacg   a   a          c  C          C    A C   aa    u g   -  uaacuguuacgugucgauguaauugugaugcauguuuagggaugugaagaugagaaugu        u   a 


Annotation confidence Not enough data
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Genome context
Chr10: 2060670-2060896 [-]

Database links

Mature ppt-miR1076-5p

Accession MIMAT0005206
Description Physcomitrella patens ppt-miR1076-5p mature miRNA
Sequence 27 - UAUCACAAGGUGCGAUAAUUG - 47
Evidence experimental
454 [1]

Mature ppt-miR1076-3p

Accession MIMAT0005207
Description Physcomitrella patens ppt-miR1076-3p mature miRNA
Sequence 177 - CCAAGCACUUAUCGCACCCUG - 197
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769