Stem-loop smo-MIR1087

Accession

MI0006071

Description

Selaginella moellendorffii smo-MIR1087 precursor miRNA

Sequence

cguuaacaucuuggaugaagugcuugcgaaagcgcuagcacuaguuugcaaacucuccguaguaaauuaauuucagaaaucaaaggaaaaaaaacacucaccaugguggcuaaagcggcggaauggcuaaaugagcuaguaacuuucacuagcgagucauuugagaccacuuuaacugccauggugaguguuuauuuuccuuugauuuuuguaauugguuuguugcagagaguuUACAGAUUGGUGUUAGUGCUUccacaagcgc
......((((...))))..(((((((.(.(((((((((((((((((((.((((((((.((((((((((((((.(((((((((((((((((.((((((((((((((((((.(((((.(((.((((((((......((((((.......)))))).))))))))..).)).))))).)))))))))))))))))).))))))))))))))))).)))))))))))))).)))))))).))))))))))))))))))).).)))))))

Structure

cguuaacaucuuggaugaa       c a                   c        c              u                 a                  c     c  - -g        aaauga      aa 
                   gugcuug g aagcgcuagcacuaguuug aaacucuc guaguaaauuaauu cagaaaucaaaggaaaa aaacacucaccauggugg uaaag gg c  gaauggcu      gcuagu  c
                   ||||||| | ||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||| || |  ||||||||      ||||||  u
                   cgcgaac c UUCGUGAUUGUGGUUAGAC Uuugagag cguuguuugguuaa guuuuuaguuuccuuuu uuugugagugguaccguc auuuc cc g  uuuacuga      cgauca  u
-------------------       a c                   A        a              u                 a                  a     a  a ag        -----g      cu 

Annotation confidence Not enough data

Genome context

Unknown

Mature smo-miR1087

• Accession: MIMAT0005239
• Description: Selaginella moellendorffii smo-miR1087 mature miRNA
• Sequence: 235 - UACAGAUUGGUGUUAGUGCUU - 255
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769