Stem-loop smo-MIR1108

Accession

MI0006095

Description

Selaginella moellendorffii smo-MIR1108 precursor miRNA

Sequence

gugagucuguuuaggcaagugaauauguugcucuuguauuuguugcucuggacuaagguugccgcaaauagccuuuguaaaugccacagugguccugaugagggguuauguuucucagcucaagcccagcaugaccucuagcuccagaccuucuggaagcaaugaccuUGAGCUGAGAGACAUAACCCCccagcaggaucauuaugcugcccccaaacgcuauuugcgcuaaguauguugcacccuacuccagggcagccaauacaagagcaacauauuucacuugccuaaacauguu
.......(((((((((((((((((((((((((((((((((.(((((((((((...(((.(((((((((((((.((((.....((...((((((((((.((.(((((((((((((((((((((((..((............((((((((...))))).)))..))..))))))))))))))))))))))).)).))))))))))..))......)))).))))))))))...........))).)))..))))))))))).))))))))))))))))).))))))))))))))))....

Structure

gugaguc                -                 u           cua   u   -----------          c    -uaaau  cac          a  a                       cc  gcaugaccucua   -     c 
       uguuuaggcaagugaa uauguugcucuuguauu guugcucugga   agg ugc           cgcaaauagc uuug      gc   agugguccug ug gggguuauguuucucagcucaag  ca            gcu ccaga  
       |||||||||||||||| ||||||||||||||||| |||||||||||   ||| |||           |||||||||| ||||      ||   |||||||||| || |||||||||||||||||||||||  ||            ||| ||||| c
       acaaauccguucacuu auacaacgagaacauaa cgacgggaccu   ucc acg           gcguuuaucg aaac      cg   uuacuaggac ac CCCCAAUACAGAGAGUCGAGUuc  gu            cga ggucu  
---uugu                u                 c           -ca   c   uuguaugaauc          c    ccccgu  -ua          g  c                       ca  ----------aa   a     u 

Annotation confidence Not enough data

Comments

Axtell et al. report the alternative production of at least 2 miR/miR* duplexes from the MIR1108 hairpin [1]. The sequence of the most abundant clone is shown here.

Genome context

Unknown

Mature smo-miR1108

• Accession: MIMAT0005265
• Description: Selaginella moellendorffii smo-miR1108 mature miRNA
• Sequence: 169 - UGAGCUGAGAGACAUAACCCC - 189
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769