Stem-loop smo-MIR1111

Accession

MI0006098

Description

Selaginella moellendorffii smo-MIR1111 precursor miRNA

Sequence

ugcaacuggcuuccauugcuuaaugucuaugugacuuuagaaccacugccggaaaagguugucgaagguguacauaaucaccacaacagcccgguuuuguuuggucauggcuaugaaacaucccaggagggcuaugaaacaucuuaggaaggugccuauauccugguccgaccagguccugggauguuucauaGCCAUGACUAAGCAGGACCAGacuguugugguuauguccacuucugaugacauuuuuuuggcagugguuucaaaguuacauagacguugagcagugaaagccaguuguugu
.(((((((((((.(((((((((((((((((((((((((.(((((((((((((((((((((((((.(((((.(((((...((((((((((.(.((((((((((((((((((((((((((((((((((((((((.....................))))....((((((...)))))))))))))))))))))))))))))))))))))))))).).))))))))))))))).))))).))))))).)))))))))))))))))).))))))))))))))))))))))))).)))))))))))...

Structure

--u           c                         a                  -       a     u     auc          c c                                    gggcuaugaaacaucuuaggaaggugccuauau      c 
   gcaacuggcuu cauugcuuaaugucuaugugacuuu gaaccacugccggaaaag guugucg aggug acaua   accacaacag c gguuuuguuuggucauggcuaugaaacaucccagga                                 ccuggu  
   ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||| |||||   |||||||||| | ||||||||||||||||||||||||||||||||||||                                 |||||| c
   uguugaccgaa gugacgaguugcagauacauugaaa uuuggugacgguuuuuuu caguagu uucac uguau   ugguguuguc G CCAGGACGAAUCAGUACCGauacuuuguaggguccu                                 ggacca  
ugu           a                         c                  a       c     c     ---          a A                                    ---------------------------------      g 

Annotation confidence Not enough data

Comments

Axtell et al. report the alternative production of at least 2 miR/miR* duplexes from the MIR1111 hairpin [1]. The sequence of the most abundant clone is shown here.

Genome context

Unknown

Mature smo-miR1111

• Accession: MIMAT0005268
• Description: Selaginella moellendorffii smo-miR1111 mature miRNA
• Sequence: 194 - GCCAUGACUAAGCAGGACCAG - 214
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769