Stem-loop hiv1-mir-H1

Accession

MI0006106

Description

Human immunodeficiency virus 1 hiv1-mir-H1 precursor miRNA

Sequence

uCCAGGGAGGCGUGCCUGGGCgggacuggggaguggcgcccucagauccugcauauaagcagcgcuuuuuucggugcguua
.((((((((((((((....((((((((((((.((...)))))))).))))))......))).))))))))).)).......

Structure

------u  -         -   --CUGG      -      a  g 
       CC AGGGAGGCG UGC      GCggga cugggg gu  
       || ||||||||| |||      |||||| |||||| || g
       gg uuuuuucgc acg      cguccu gacucc cg  
auugcgu  c         g   aauaua      a      -  c 

Annotation confidence Not enough data

Genome context

Unknown

Mature hiv1-miR-H1

• Accession: MIMAT0004480
• Description: Human immunodeficiency virus 1 hiv1-miR-H1 mature miRNA
• Sequence: 2 - CCAGGGAGGCGUGCCUGGGC - 21
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 15782219
   Identification of microRNAs of the herpesvirus family
   "Pfeffer S, Sewer A, Lagos-Quintana M, Sheridan R, Sander C, Grasser FA, van Dyk LF, Ho CK, Shuman S, Chien M, Russo JJ, Ju J, Randall G, Lindenbach BD, Rice CM, Simon V, Ho DD, Zavolan M, Tuschl T"
   "Nat Methods (2005) 2:269-276


2. PubMed ID: 17855543
   Analysis of the interaction of primate retroviruses with the human RNA interference machinery
   "Lin J, Cullen BR"
   "J Virol (2007) 81:12218-12226


3. Evidence and nature of a novel miRNA encoded by HIV-1
   "Kaul D, Khanna A and Suman"
   "Proc Indian Natn Sci Acad. (2006) 72:91-95


4. PubMed ID: 19082544
   HIV-1 genome-encoded hiv1-mir-H1 impairs cellular responses to infection
   "Kaul D, Ahlawat A, Gupta SD"
   "Mol Cell Biochem (2009) 323:143-148


5. PubMed ID: 20546828
   HIV-miR-H1 evolvability during HIV pathogenesis
   "Lamers SL, Fogel GB, McGrath MS"
   "Biosystems (2010) 101:88-96