Stem-loop rno-mir-466c

Accession

MI0006114

Description

Rattus norvegicus rno-mir-466c precursor miRNA

Literature search

15 open access papers mention rno-mir-466c
(98 sentences)

Sequence

2304 reads, 6.0 reads per million, 323 experiments

cauguguguaUGUGAUGUGUGUAUGUACAUGUguguauaugaagaaacAUAUACAUGCACACAUACACAcacacuggca
......(((..(((.(((((((((((...((((((((((((......)))))))))))).))))))))))))))..)))

Structure

caugug   aU   A           ACA            aa 
      ugu  GUG UGUGUGUAUGU   UGUguguauaug  g
      |||  ||| |||||||||||   ||||||||||||   
      acg  cac acACACAUACA   ACGUACAUAUAc  a
------   gu   -           --C            aa 

Annotation confidence Medium

Genome context

chr17: 72060077-72060155 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from rno-mir-466c

Mature rno-miR-466c-5p

• Accession: MIMAT0005279
• Description: Rattus norvegicus rno-miR-466c-5p mature miRNA
• Sequence: 11 - UGUGAUGUGUGUAUGUACAUGU - 32
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-466c-3p

• Accession: MIMAT0017287
• Description: Rattus norvegicus rno-miR-466c-3p mature miRNA
• Sequence: 49 - AUAUACAUGCACACAUACACA - 69
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249